View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_low_4 (Length: 425)
Name: NF13960_low_4
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_low_4 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 10138598 - 10139011
Alignment:
| Q |
16 |
caagataaccatttccctttaatgacaaaagtctttttggatttagacacaaatgttattttaactggaaaacaaag----aaagggacatatataaaag |
111 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
10138598 |
caagataaccattcccctttaatgacaaaagtctttttcgatttagacacaaatgttattttaactggaaaacaaagaaagaaagggacttatataaaag |
10138697 |
T |
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| Q |
112 |
tttctgaaaagaggggcgctaaatttcccaaatcactagaccaatcgtaatagctcaagggtttcaccagcatgtagatatttatcaccagccttattaa |
211 |
Q |
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| T |
10138698 |
tttctgaaaagaggggcactaaatttcccaaatcactagaccaaacgtaatagctcaaggacttcaccagcatgtagatatttatcaccagccttattaa |
10138797 |
T |
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| Q |
212 |
tagaaactctgagcgccctatactctccataagtaaaagtttgataaagacgtgggtgatcatggtccaccaactcctttggggcctcaatatttccctt |
311 |
Q |
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| T |
10138798 |
tagaaactctgagcgccctatactctccataagtaaaagattgataaagacgtgggtgatcatggtccaccaactcctttggggcctcaatatttccctt |
10138897 |
T |
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| Q |
312 |
ccggggtcccaacataaatgtagcaattgaataacgtgtagtagcttccttacatcttacatggtgcttcacattgcaaaaccttccattgctccatacc |
411 |
Q |
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| T |
10138898 |
cctgggtcccaacataaatgtagcaattgaataacgtgtagtagcttccttgcatcgtacatggtgcttcacattgcaaaaccttccattgctccatacc |
10138997 |
T |
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| Q |
412 |
tgcattcatttcct |
425 |
Q |
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| T |
10138998 |
tgcattcatttcct |
10139011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 56 - 408
Target Start/End: Original strand, 10085981 - 10086334
Alignment:
| Q |
56 |
atttagacacaaatgtt-attttaactggaaaacaaagaaagggacatatataaaagtttctgaaaagaggggcgctaaatttcccaaatcactagacca |
154 |
Q |
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| T |
10085981 |
atttagacacaagtgtttaatttaactggaacacaaagaaagggacatatatcaatatttttgaaaagaggggcactaaatttcccaaatcactaaacca |
10086080 |
T |
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| Q |
155 |
atcgtaatagctcaagggtttcaccagcatgtagatatttatcaccagccttattaatagaaactctgagcgccctatactctccataagtaaaagtttg |
254 |
Q |
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| T |
10086081 |
aacgtaatagctcaaggacttcacaagcctgcagaaatttatcacgatcattattatcagaaactctgagcgtcctatactcttcataagtaaaaggtcg |
10086180 |
T |
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| Q |
255 |
ataaagacgtgggtgatcatggtccaccaactcctttggggcctcaatatttcccttccggggtcccaacataaatgtagcaattgaataacgtgtagta |
354 |
Q |
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| T |
10086181 |
ataaagaagcgggtgatcatggtccaccaactcctttggagcctcaacatttcccttcctcggtcccaacataaatgtagcaattgaataacgtgtagta |
10086280 |
T |
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| Q |
355 |
gcttccttacatcttacatggtgcttcacattgcaaaaccttccattgctccat |
408 |
Q |
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| T |
10086281 |
ggttccttgcatagtacacggtgcttcacattgcaaaaccttccattgctccat |
10086334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 54 - 416
Target Start/End: Complemental strand, 11304795 - 11304431
Alignment:
| Q |
54 |
ggatttagacacaaatgtt-attttaactggaaaacaaagaaagggacatatataaaagtttctgaaaagagggg-cgctaaatttcccaaatcactaga |
151 |
Q |
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||||||||||||| |||| | |||||||| || ||||||||| |||||| |||||| |||||||||||||||| | |||||||||||||||||||| | |
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| T |
11304795 |
ggatttagacacaggtgtttaatttaactgaaacacaaagaaatggacatgtataaatatttctgaaaagagggggcactaaatttcccaaatcactaaa |
11304696 |
T |
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| Q |
152 |
ccaatcgtaatagctcaagggtttcaccagcatgtagatatttatcaccagccttattaatagaaactctgagcgccctatactctccataagtaaaagt |
251 |
Q |
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| T |
11304695 |
ccaaatgtagtagcttaaggacttcacaatcatgcagagatttatcacgagccttcttaatggaaactctgagcgtcttatattcttcataagtaaaagg |
11304596 |
T |
|
| Q |
252 |
ttgataaagacgtgggtgatcatggtccaccaactcctttggggcctcaatatttcccttccggggtcccaacataaatgtagcaattgaataacgtgta |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
11304595 |
ttgataaagacgtgggtgatcatggtccaccaactcctttggagcctcaacatttcccttcctcggtcccaacataaatgtagcaattgagtaacgtgta |
11304496 |
T |
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| Q |
352 |
gtagcttccttacatcttacatggtgcttcacattgcaaaaccttccattgctccatacctgcat |
416 |
Q |
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| T |
11304495 |
gtaggctctttgcatagtacacggtgcttcacattgcaaaaccttccattgctccatacctgcat |
11304431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 140 - 423
Target Start/End: Original strand, 10143932 - 10144212
Alignment:
| Q |
140 |
caaatcactagaccaatcgtaatagctcaagggtttcaccagcatgtagatatttatcaccagccttattaatagaaactctgagcgccctatactctcc |
239 |
Q |
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||||||||| || ||| || |||||||||| | |||||| | |||||||||||||||||||||||||| || ||| ||||||| | |||||||||| | |
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| T |
10143932 |
caaatcactggatcaaacgcaatagctcaaagacttcaccggtctgtagatatttatcaccagccttatttatggaatctctgagagtcctatactcttc |
10144031 |
T |
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| Q |
240 |
ataagtaaaagtttgataaagacgtgggtgatcatggtccaccaactcctttggggcctcaatatttcccttccggggtcccaacataaatgtagcaatt |
339 |
Q |
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| T |
10144032 |
ataagtaaaaggttgataaagacgtgggtgatcaaggtccatcaactcctttggggtctcaatatttcccttcctgggtcccaacataaatgtagcaatt |
10144131 |
T |
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| Q |
340 |
gaataacgtgtagtagcttccttacatcttacatggtgcttcacattgcaaaaccttccattgctccatacctgcattcatttc |
423 |
Q |
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| T |
10144132 |
g---aacgtatagtagcttccttacattgtatgtggtgcttcacattgcaaaatcttccattgctccatacctgcattcatttc |
10144212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 246 - 423
Target Start/End: Original strand, 10151023 - 10151200
Alignment:
| Q |
246 |
aaaagtttgataaagacgtgggtgatcatggtccaccaactcctttggggcctcaatatttcccttccggggtcccaacataaatgtagcaattgaataa |
345 |
Q |
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| T |
10151023 |
aaaaggtttatatagacgtgggtgatcatggtccaccgcctctgttggaacctcaacatttcccttcctcggtcccaacatgaatgtagcaattgaaaag |
10151122 |
T |
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| Q |
346 |
cgtgtagtagcttccttacatcttacatggtgcttcacattgcaaaaccttccattgctccatacctgcattcatttc |
423 |
Q |
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||||| ||||||||||| ||| |||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
10151123 |
cgtgtggtagcttccttgcattgtacacggtgctttacattgtaaaaccttccattgctccatacctgtattcatttc |
10151200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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