View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_low_5 (Length: 397)
Name: NF13960_low_5
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 41380431 - 41380071
Alignment:
| Q |
18 |
aaatgaaggaaattgcttctattcaatgatattttt-gtgtgtggaagattcaatgannnnnnnnncttgcttaaatgttttaagtgaagctttttt-gg |
115 |
Q |
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| T |
41380431 |
aaatgaaggaaattgcttgtattcaatgatattttttgtgtgtggaagattcaatgatttttttttcttgcttaaatgttttaagtgaagctttttttgg |
41380332 |
T |
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| Q |
116 |
tgagactttggttggtgtttgtatagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatagatgagaaaattaaactacaga |
215 |
Q |
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| T |
41380331 |
ggagactttggttggtgtttgtatagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatggatgagaaaattaaactacaga |
41380232 |
T |
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| Q |
216 |
tacattatatgagctaggttttgtaattttgttgaagatgttcatagaatgagaccatgacattatataggtggtgaaatccttgtatccagagacccag |
315 |
Q |
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| T |
41380231 |
tacattatatgagctaggttttgtaattttgttgaagatgtacatagaatgagaccatgacat--tataggtggtgaaatccttgtatctagagacccag |
41380134 |
T |
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| Q |
316 |
aacttatgttgcagaacaccacatgaaaattcctttcattgcttagaatggaagcaaagtgta |
378 |
Q |
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| T |
41380133 |
aacttctgttgtagaacaccacatgaaaattcctttcattgcttggaatggaagcaaagtgta |
41380071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 139 - 378
Target Start/End: Complemental strand, 7969879 - 7969631
Alignment:
| Q |
139 |
tagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaa-------tagatgagaaaattaaactacagatacattatat----ga |
227 |
Q |
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| T |
7969879 |
tagcatctataatagatgcttgattgaagtacaaaa-ttagaaagtattaaaaaaatatatatatgagaaa-ttaagctacagatacattatatatatga |
7969782 |
T |
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| Q |
228 |
gctaggttttgtaattttgttgaagatgttcatagaatgagaccatgacattatataggtggtgaaatccttgtatccagagacccagaacttatgttgc |
327 |
Q |
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| T |
7969781 |
gctaggttttgtaattttgttgaagatgttcatagaatgagaccatgacattatataggtggtgaaatccttgtatccagagacccagaacttatgttgc |
7969682 |
T |
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| Q |
328 |
agaacaccacatgaaaattcctttcattgcttagaatggaagcaaagtgta |
378 |
Q |
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| T |
7969681 |
agaacaccacatgaaaattcctttcattgcttagaatggaagcaaagtgta |
7969631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 139 - 378
Target Start/End: Original strand, 8033905 - 8034149
Alignment:
| Q |
139 |
tagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgt---aaaaatagatgagaaaattaaactacagatacattata----tgagcta |
231 |
Q |
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| T |
8033905 |
tagcatctataatagatgcttggttgaagtacaaaa-ttagaaagtattaaaaaaaaaaatgagaaa-ttaagctacagatacattatatatatgagcta |
8034002 |
T |
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| Q |
232 |
ggttttgtaattttgttgaagatgttcatagaatgagaccatgacattatataggtggtgaaatccttgtatccagagacccagaacttatgttgcagaa |
331 |
Q |
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| T |
8034003 |
ggttttgtaattttgttgaagatgttcatagaatgagaccatgacatcatataggtggtgaaatccttgtatccagagacccagaacttatgttgcagaa |
8034102 |
T |
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| Q |
332 |
caccacatgaaaattcctttcattgcttagaatggaagcaaagtgta |
378 |
Q |
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| T |
8034103 |
caccatatgaaaattcctttcattgcttagaatggaagcaaagtgta |
8034149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 8043890 - 8044055
Alignment:
| Q |
144 |
tctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatagatgagaaaa-ttaaactacagatacattatatgagctaggttttgtaat |
242 |
Q |
| |
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|||||||||||||||||| ||| |||||| || |||||| | | |||| |||||||||| ||||||||||||||||| ||||||| |||||||| |||| |
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| T |
8043890 |
tctataatagatgcttgattgatgtacaacacatagaaactatgaaaaaggatgagaaaaattaaactacagatacataatatgagttaggttttataat |
8043989 |
T |
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| Q |
243 |
tttgttgaagat-----gttcatagaatgagaccatgacattatataggtggtgaaatccttgtatc |
304 |
Q |
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| T |
8043990 |
tttgtt-atgattcaaaatttataaaatgagacagtgacattatataggtggtgaaatccttgtatc |
8044055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 8043761 - 8043819
Alignment:
| Q |
16 |
caaaatgaaggaaattgcttctattcaatgata-tttttgtgtgtggaagattcaatga |
73 |
Q |
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| T |
8043761 |
caaaatgaaggaaattgtttctattcaatgatattttttgtgtgtggaagattcaatga |
8043819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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