View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_low_6 (Length: 388)
Name: NF13960_low_6
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 175 - 376
Target Start/End: Original strand, 40324507 - 40324708
Alignment:
| Q |
175 |
cagtactaataaagtttactttgaattgaaaaatttctggccaatttttattcttnnnnnnntcacttttaaaaagaagtttatttgagaataattaaaa |
274 |
Q |
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| T |
40324507 |
cagtactaataaagtttactttgaattgaaaaatttctggccaatttttattcttaaaaaaatcacttttaaaaagaagtttatttgagaataattaaaa |
40324606 |
T |
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| Q |
275 |
atcacatcaacagtaccggctggaaaattggtcataagataaatttactacaagggtatgactagaatttccccagttcaattccaatttaagatctgcc |
374 |
Q |
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| T |
40324607 |
atcacatcaacagtaccggctggaaaattggtcataagataaatttactacaagggtatgactagaatttccccagttcaattccaatttaagatctgcc |
40324706 |
T |
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| Q |
375 |
ta |
376 |
Q |
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|| |
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| T |
40324707 |
ta |
40324708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 40324398 - 40324500
Alignment:
| Q |
13 |
catcaaacacatcttcgaaaggaaatctcactccgagtgtttgtttattgaacagggtatcggattaaaaatatgttgaaataaaaacaaggtatcaaat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40324398 |
catcaaacacatcttcgaaaggaaatctcactccgagtgtttgtttattgaacagggtatcagattaaaaatatgttgaaataaaaacaaggtatcaaat |
40324497 |
T |
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| Q |
113 |
ttc |
115 |
Q |
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||| |
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| T |
40324498 |
ttc |
40324500 |
T |
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