View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13960_low_9 (Length: 339)
Name: NF13960_low_9
Description: NF13960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13960_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 24899130 - 24898822
Alignment:
| Q |
20 |
aattccacttcaattggactttgatgtttaacatattcgacccatgacatttaaccatctatttcttcacttactaaatatt-------atgttattgtt |
112 |
Q |
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| T |
24899130 |
aattccacttcaattggactttgatgtttaacatatttgacccatgacatttaaccatctatttcttcacttactaaatattttctaacatttgattgtt |
24899031 |
T |
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| Q |
113 |
cnnnnnnnnnnnnggtagagaagaatatattattcttttgtctattctttattattaaaattgtcaagagtcgaaaatattactaaaatttacaatattt |
212 |
Q |
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| T |
24899030 |
cttttttatttttggtagagaagaatatattattgttttgtctattctttattattaaaattgtcaagagtcgaaaaaattactaaaatttacaatattt |
24898931 |
T |
|
| Q |
213 |
aaaattttagcacttttatgtcaatcataattgtttaaaattatagtttctctacaaaatttaannnnnnnnnctgtctcgttatttctatcaaatattg |
312 |
Q |
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| T |
24898930 |
aaaattttagcacttttatgtcaatcataattgtttaaaattatagtttctctacaaatttt-----ttttttctgtctcgttatttctatcaaatatta |
24898836 |
T |
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| Q |
313 |
tcttatagtattat |
326 |
Q |
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|||||||||||||| |
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| T |
24898835 |
tcttatagtattat |
24898822 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 12636015 - 12635969
Alignment:
| Q |
20 |
aattccacttcaattggactttgatgtttaacatattcgacccatga |
66 |
Q |
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| T |
12636015 |
aattccacttcaattagacttggatgtttaacatatttgacccatga |
12635969 |
T |
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