View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13961_high_2 (Length: 532)
Name: NF13961_high_2
Description: NF13961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13961_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 513
Target Start/End: Original strand, 31449675 - 31450169
Alignment:
| Q |
13 |
aatattgaccagattcaacactatgttacatatgctattattnnnnnnntgtgagaaattgtcactccaaatggaggatactcaacaactctgtcctggt |
112 |
Q |
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| T |
31449675 |
aatattgaccagattcaacactatgttacatatgctattattaaaaaaatgtgagaaattgtcactccacttc---------caacaactctgtcctggt |
31449765 |
T |
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| Q |
113 |
gatagaatgggtaacttatttggcgaaaggaattgagattggaggttatggagagacttatagtctttgtatagtagg-tcattcaaaatatgggagaac |
211 |
Q |
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| T |
31449766 |
gatagaatgggtaacttatttggcgaaaggaattgagattggaggttatggagagacttatagtctttgtatagtagggtcattcaaaatatgggagaac |
31449865 |
T |
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| Q |
212 |
cgtggtgtaattactgtgagcaat--gggatgagtcattatgtgttgagagatttccccatagatgttaaagtttgttaccgccttttagaagtagggca |
309 |
Q |
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| T |
31449866 |
cgtggtgtaattactgtgagcaatatgggatgagtcattatgtgttgagagatttccccatagatgttaaagtttgttaccgccttttagaagtagggca |
31449965 |
T |
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| Q |
310 |
tcatgcatgcaagtttctttttgtatgatttagagcaatgaaactggattccctccaactacaatgattcaaccagccagtagcacgtgtaagaactgac |
409 |
Q |
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| T |
31449966 |
tcatgcatgcaagtttctttttgtatgatttagagcaatgaaactggattccctccaactacaatgattcaaccagccagtagcacgtgtaagaactgac |
31450065 |
T |
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| Q |
410 |
ttagtgaaccatttcatatcatggaaagataccaaatgttctgttgcaccttgacaagctgtcaaaagaataaaacaaaatgatttactttgacaatagt |
509 |
Q |
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| T |
31450066 |
ttagtgaaccatttcatatcatggaaagataccaaatgttctgttgcaccttgacaagctgtcaaaagaatataacaaaatgatttactttgacaatagt |
31450165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 31426251 - 31426302
Alignment:
| Q |
428 |
tcatggaaagataccaaatgttctgttgcaccttgacaagctgtcaaaagaa |
479 |
Q |
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| T |
31426251 |
tcatgcaaagatacgaaatgttctgtttcacctcgacaagctgtcaaaagaa |
31426302 |
T |
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