View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13961_high_6 (Length: 302)
Name: NF13961_high_6
Description: NF13961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13961_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 7655742 - 7655468
Alignment:
| Q |
8 |
tgagatgaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgt |
107 |
Q |
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| T |
7655742 |
tgagaagaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgt |
7655643 |
T |
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| Q |
108 |
gactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagct |
207 |
Q |
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| T |
7655642 |
gactgcagggttcacatgtccaccagatatgtttgctccaacagaaacggcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagca |
7655543 |
T |
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| Q |
208 |
ggtgttgcagggccattattggtaagtttacctgccaaaataaccaacaatcattcattttactagcatcataat |
282 |
Q |
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| T |
7655542 |
ggtgttgcagggccattattggtaagtttgcctgccaaaataaccaacaatcattcattttactagcatcataat |
7655468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 41418436 - 41418521
Alignment:
| Q |
79 |
atgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
164 |
Q |
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| T |
41418436 |
atgttaccaccaacgaaggcaccgaaggtgacagcggggttgacatgtccaccggagatgttagcaccaacggagacagcaacaaa |
41418521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 52102974 - 52103223
Alignment:
| Q |
8 |
tgagatgaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgt |
107 |
Q |
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| T |
52102974 |
tgagaagaatgcaagcaacaactgcaccaagtaactgtgcaatccaatacaaaatacttctcaagaaggtaatgtttcctccaatgaaagcaccaaatgt |
52103073 |
T |
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| Q |
108 |
gactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagct |
207 |
Q |
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| T |
52103074 |
gactgcagggttcacatgtccaccagaaatgtttgcaccaacagaaacagccacaaataacccaaatgcatgagataatgatgcaactatgagaccttca |
52103173 |
T |
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| Q |
208 |
ggtgttgcagggccattattggtaagtttacctgccaaaataaccaacaa |
257 |
Q |
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| T |
52103174 |
ggagtggcagctccattgtttgtaagtttatctgccacaatagccaacaa |
52103223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 23339615 - 23339438
Alignment:
| Q |
19 |
caagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggt |
118 |
Q |
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| T |
23339615 |
caagcaacaacagaaccaagcaactgagcaatccaatacaaaaggcctctaatgagtgtaatgtgtccaccaatgaatgcaccaaaagtgacagcagggt |
23339516 |
T |
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| Q |
119 |
tcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagcta |
196 |
Q |
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| T |
23339515 |
tgacatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaaatgcatgtgatagtgatgcagcta |
23339438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 43585250 - 43585201
Alignment:
| Q |
115 |
gggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
164 |
Q |
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| T |
43585250 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
43585201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 4190170 - 4190243
Alignment:
| Q |
100 |
ccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaa |
173 |
Q |
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| T |
4190170 |
ccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaaaagtgcaaa |
4190243 |
T |
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