View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13961_high_8 (Length: 250)
Name: NF13961_high_8
Description: NF13961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13961_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33438156 - 33438395
Alignment:
| Q |
1 |
caacccttactagtatgtgtttatctttcccataggcatggannnnnnnnn-gaaggacccataggcatggatatgaaaagcaaaaattaaatgtacaac |
99 |
Q |
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| T |
33438156 |
caacccttactagtatgtgtttatctttcccataggcatggatatttttgttgaaggacccataggcatggatatgaaaagcaaaaattaaatgtacaac |
33438255 |
T |
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| Q |
100 |
ttgttttcgaaagcaaatgtaaaactcatcaatcaacattaaatgtgctattagcaac-aaaaaataaacattaaatgggtaacctgtaaatgagttaat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33438256 |
ttgttttcgaaagcaaatgtaaaactcatcaatcaacattaaatgtgctattattaacaaaaaaataaacattaaatgggtaacctgtaaatgagttaat |
33438355 |
T |
|
| Q |
199 |
tttacagcttaaatttcgttttcaaatctcccaatatatt |
238 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
33438356 |
tttacagcttaaatttcgttttcaaatcccccaatatatt |
33438395 |
T |
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