View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13961_low_1 (Length: 650)
Name: NF13961_low_1
Description: NF13961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13961_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 16 - 634
Target Start/End: Complemental strand, 33105694 - 33105074
Alignment:
| Q |
16 |
ataatactaaatagaaaagataaacaataaacaatggtcataaagaagagattgattttctagatttcattgactctgctcacgtttgctttcccctgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33105694 |
ataatactaaatagaaaagataaacaataaacaatggtcataaagaagagattgattttctagatttcattgactctgctcacgtttgctttcccctgtt |
33105595 |
T |
|
| Q |
116 |
ttcctctgttgtgtctctcatatgctcaactagtagttcctttttctcagctcttgaaaattgtgtcagtgtgcatggcaagaatttgagccaaatcaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33105594 |
ttcctctgttgtgtctctcatatgctcaactagtagttcctttttctcagctcttgaaaattgtgtcagtgtgcatggcaagaatttgagccaaatcaat |
33105495 |
T |
|
| Q |
216 |
aggtcaaatttaatgaagttcccatattttgggaaacttggaaggatcttcactgnnnnnnnaagaattctagctggtgatttttgttctctctatccag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33105494 |
aggtcaaatttaatgaagttcccatattttgggaaacttggaaggatcttcactgtttttttaagaattctagctggtgatttttgttctctctatccag |
33105395 |
T |
|
| Q |
316 |
aaaaatcatcatccttgctaatagcaccatcca--atgtgacgacactgtggtcaccaagaatgcttgcatactcccaaagtagaaaagattcaaaagag |
413 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33105394 |
aaaaatcatcatccttgctaatagcacaatccacaatgtgacgacactgtggtcaccaagaatgcttgcatactcccaaagtagaaaagattcaaaagag |
33105295 |
T |
|
| Q |
414 |
atagccattgattatgtctttgtaagttggttacaactgtttagatatcttacaaaccaagtaatatgtagtagactagagtaattggtagagctatcaa |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33105294 |
atagccattgattatgtctttgtaagttggttacaactgtttagacatcttacaaaccaagtaatatgtagtagactagagtaattggtagagctatcaa |
33105195 |
T |
|
| Q |
514 |
cattccaaaaataaccctgcaaggaaatttttcaattttagaaaaaagggtcaatttgtttcttaatagaaagagtagttagaaacaaacaataaagtgt |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33105194 |
cattccaaaaataaccctgcaaggaaatttttcaattttagaaaaaagggtcaatttgtttcttaatagaaagagtagttagaaacaaacaataaagtgt |
33105095 |
T |
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| Q |
614 |
gaagtttaattaattgcaatt |
634 |
Q |
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| T |
33105094 |
gaagtttaattaattgcaatt |
33105074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 463 - 535
Target Start/End: Original strand, 10834745 - 10834817
Alignment:
| Q |
463 |
ttacaaaccaagtaatatgtagtagactagagtaattggtagagctatcaacattccaaaaataaccctgcaa |
535 |
Q |
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|||||||||||| | |||||||||| |||||||||||| || ||||| ||||| ||||| |||||||||||| |
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| T |
10834745 |
ttacaaaccaaggagaatgtagtagagtagagtaattggaagggctattaacataccaaatataaccctgcaa |
10834817 |
T |
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