View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13961_low_10 (Length: 226)

Name: NF13961_low_10
Description: NF13961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13961_low_10
NF13961_low_10
[»] chr3 (17 HSPs)
chr3 (18-210)||(30914599-30914791)
chr3 (21-155)||(26647015-26647146)
chr3 (45-158)||(19848998-19849114)
chr3 (45-158)||(20036597-20036713)
chr3 (23-198)||(19812248-19812420)
chr3 (24-154)||(20046135-20046262)
chr3 (46-179)||(19956071-19956207)
chr3 (24-158)||(26653160-26653291)
chr3 (26-149)||(20016179-20016302)
chr3 (81-158)||(24840007-24840084)
chr3 (87-158)||(19858080-19858151)
chr3 (94-158)||(19943728-19943792)
chr3 (24-158)||(19951132-19951263)
chr3 (81-156)||(19853522-19853597)
chr3 (89-156)||(19989532-19989599)
chr3 (21-157)||(19818566-19818699)
chr3 (87-179)||(19838380-19838472)
[»] chr1 (1 HSPs)
chr1 (24-150)||(1717230-1717353)
[»] chr8 (3 HSPs)
chr8 (87-158)||(22652127-22652198)
chr8 (21-146)||(22685656-22685778)
chr8 (81-156)||(22689688-22689763)
[»] chr5 (2 HSPs)
chr5 (24-156)||(9815047-9815176)
chr5 (24-156)||(26354903-26355035)
[»] chr7 (5 HSPs)
chr7 (26-134)||(12581424-12581529)
chr7 (26-134)||(12497241-12497346)
chr7 (26-134)||(12521106-12521211)
chr7 (81-134)||(12519825-12519878)
chr7 (81-134)||(12580114-12580167)
[»] chr4 (2 HSPs)
chr4 (59-154)||(6397749-6397844)
chr4 (45-147)||(6398280-6398382)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 30914791 - 30914599
Alignment:
Q  18 atgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaagga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30914791 atgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaagga 30914692  T
Q  118 atgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactcttataaagttctt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30914691 atgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactcttataaagttctt 30914599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 26647146 - 26647015
Alignment:
Q  21 ttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 120  Q
    ||||||||||||||||||| ||   |||||||||||||| ||||||||||||||| |   ||||| |||||| ||| |||||||||||||| ||||||||    
T  26647146 ttccctctagcaagatgaacag---caataggaaacaaacaacttttcaccaaatttagatgaggaaaaacataaactgacaaccaagtagaaaggaatg 26647050  T
Q  121 cttcatgttcaatttcactaactttatcaatgaaa 155  Q
    |||||||||||||||||||| ||||||| ||||||    
T  26647049 cttcatgttcaatttcactacctttatccatgaaa 26647015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 19849114 - 19848998
Alignment:
Q  45 gcaataggaaacaaaaaacttttcaccaaatc---tttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaa 141  Q
    ||||||||||||||| |||||||||||||||    ||| ||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||     
T  19849114 gcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactac 19849015  T
Q  142 ctttatcaatgaaaata 158  Q
    |||||||||||||||||    
T  19849014 ctttatcaatgaaaata 19848998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 20036597 - 20036713
Alignment:
Q  45 gcaataggaaacaaaaaacttttcaccaaatc---tttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaa 141  Q
    ||||||||||||||| |||||||||||||||    ||| ||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||     
T  20036597 gcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactac 20036696  T
Q  142 ctttatcaatgaaaata 158  Q
    |||||||||||||||||    
T  20036697 ctttatcaatgaaaata 20036713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 19812420 - 19812248
Alignment:
Q  23 ccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgct 122  Q
    ||||||||||||| ||||||   | || ||||||||| |  |||||||||||| ||| ||||| ||||||||||||||||||||||||| ||| ||||||    
T  19812420 ccctctagcaagaagaatag---cgatcggaaacaaagactttttcaccaaatatttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgct 19812324  T
Q  123 tcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactct 198  Q
    |||||||||||||||||| ||||| ||| ||||||| | |||  | |||||||  || ||||||||| ||||||||    
T  19812323 tcatgttcaatttcactacctttaccaacgaaaatattgatccattttgatgtggtagccttaccttttttactct 19812248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 20046262 - 20046135
Alignment:
Q  24 cctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgctt 123  Q
    ||||||||||||| |||||   |||||| ||||||| || ||||||||| || ||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  20046262 cctctagcaagattaatag---caatagaaaacaaacaatttttcaccatatttttatgaggaaaaacaaaaattgacaaccaagtagtaaggaaggctt 20046166  T
Q  124 catgttcaatttcactaactttatcaatgaa 154  Q
    | ||||||||||||||| ||||||| |||||    
T  20046165 cgtgttcaatttcactacctttatcgatgaa 20046135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 19956207 - 19956071
Alignment:
Q  46 caataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaac 142  Q
    |||||||||||||| ||||||||||  ||   | ||| ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| |    
T  19956207 caataggaaacaaataacttttcacggaagaatatttatgagggaaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaatttcactacc 19956108  T
Q  143 tttatcaatgaaaatactcatctctattgatgttcta 179  Q
    ||||||||||||||||  ||||  || ||||||||||    
T  19956107 tttatcaatgaaaatatccatccatagtgatgttcta 19956071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 26653291 - 26653160
Alignment:
Q  24 cctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgctt 123  Q
    |||||||||||||||| ||   |||||| ||||||| |||||||||| || ||| | ||||| ||||||||||||||||||||||  | ||||||||| |    
T  26653291 cctctagcaagatgaacag---caatagaaaacaaagaacttttcactaattctatatgaggaaaaacaaaaattgacaaccaagctgcaaggaatgcat 26653195  T
Q  124 catgttcaatttcactaactttatcaatgaaaata 158  Q
    ||||||||||||||||| |||  ||||||||||||    
T  26653194 catgttcaatttcactaccttagtcaatgaaaata 26653160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 20016179 - 20016302
Alignment:
Q  26 tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgct 122  Q
    |||||||||||||||||   |||| ||||||||| ||||||||||  ||   | ||| |||||||||||||||||||||| |||||||| ||| ||||||    
T  20016179 tctagcaagatgaatag---caatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgct 20016275  T
Q  123 tcatgttcaatttcactaactttatca 149  Q
    |||||||||||||||||| ||||||||    
T  20016276 tcatgttcaatttcactacctttatca 20016302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 24840007 - 24840084
Alignment:
Q  81 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 158  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||||||| ||||||| |||||||||    
T  24840007 tgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaata 24840084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 19858151 - 19858080
Alignment:
Q  87 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 158  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||| |||||||||    
T  19858151 aaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaata 19858080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 19943792 - 19943728
Alignment:
Q  94 aaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 158  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||    
T  19943792 aaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaata 19943728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 19951263 - 19951132
Alignment:
Q  24 cctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgctt 123  Q
    |||||||||||||||||||   ||||||| | | || ||||  ||||||| |  || | ||| |||||||||| |||||||||||||  |||||| ||||    
T  19951263 cctctagcaagatgaatag---caataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggctt 19951167  T
Q  124 catgttcaatttcactaactttatcaatgaaaata 158  Q
    ||||||||||||||||| |||||||| ||||||||    
T  19951166 catgttcaatttcactacctttatcagtgaaaata 19951132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 19853597 - 19853522
Alignment:
Q  81 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaa 156  Q
    ||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||| ||| |||||    
T  19853597 tgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaaagaaaa 19853522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 19989599 - 19989532
Alignment:
Q  89 aacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaa 156  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| |||| || |||||||||||||||    
T  19989599 aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaa 19989532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 19818699 - 19818566
Alignment:
Q  21 ttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 120  Q
    |||||||||||||||| || ||   ||| |||||||| | || ||||||||||||  || ||||| |||||||||||||| |||||||||| ||| || |    
T  19818699 ttccctctagcaagattaacag---caacaggaaacagataatttttcaccaaattcttatgaggaaaaacaaaaattgataaccaagtagcaagaaaag 19818603  T
Q  121 cttcatgttcaatttcactaactttatcaatgaaaat 157  Q
    ||||||||||||||||  || ||||| |||| |||||    
T  19818602 cttcatgttcaatttcggtacctttaccaataaaaat 19818566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 19838472 - 19838380
Alignment:
Q  87 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttcta 179  Q
    |||||||||||||||||||||||||  || || ||||||||||||||||| ||| ||||||| |||||||||  ||||  || ||||||||||    
T  19838472 aaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatccatagtgatgttcta 19838380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 1717353 - 1717230
Alignment:
Q  24 cctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgctt 123  Q
    |||||||||||||||| ||   |||||||||||||| |  ||||||||||| |||| ||||| |||||| |||  ||||||||||||| ||| |||||||    
T  1717353 cctctagcaagatgaacag---caataggaaacaaagattttttcaccaaagctttatgaggaaaaacataaaccgacaaccaagtagcaagaaatgctt 1717257  T
Q  124 catgttcaatttcactaactttatcaa 150  Q
    ||||||||||||||||| |||||||||    
T  1717256 catgttcaatttcactacctttatcaa 1717230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 22652127 - 22652198
Alignment:
Q  87 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 158  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||    
T  22652127 aaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaata 22652198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 22685656 - 22685778
Alignment:
Q  21 ttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 120  Q
    ||||||||||||||||||||||   |||| ||||||| | || |||||||||||  ||| ||||| |||||||||| ||||||||||| || ||| ||||    
T  22685656 ttccctctagcaagatgaatag---caatcggaaacatagaagttttcaccaaaattttatgaggaaaaacaaaaagtgacaaccaagcagcaagaaatg 22685752  T
Q  121 cttcatgttcaatttcactaacttta 146  Q
    ||||||| |||||||||||| |||||    
T  22685753 cttcatgctcaatttcactaccttta 22685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 22689688 - 22689763
Alignment:
Q  81 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaa 156  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||| || | ||||| |||||||    
T  22689688 tgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatgaaaa 22689763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 9815176 - 9815047
Alignment:
Q  24 cctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgctt 123  Q
    |||||||||||||||||||   |||||| ||||||| ||||||||||||||  ||| ||||  |||||||| ||||||||||| |||| || ||| ||||    
T  9815176 cctctagcaagatgaatag---caatagaaaacaaagaacttttcaccaaagatttatgagttaaaacaaagattgacaaccacgtagcaatgaacgctt 9815080  T
Q  124 catgttcaatttcactaactttatcaatgaaaa 156  Q
    |||| |||||||||||| |||| || |||||||    
T  9815079 catgctcaatttcactacctttgtcgatgaaaa 9815047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 26354903 - 26355035
Alignment:
Q  24 cctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaa-atc--tttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 120  Q
    |||||||||||||||||||   |||||||||||||| ||||||||||||| ||   |||   ||| |||||||||||||| ||||||| |  || |||||    
T  26354903 cctctagcaagatgaatag---caataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatg 26354999  T
Q  121 cttcatgttcaatttcactaactttatcaatgaaaa 156  Q
    |||||||||||| ||||||| ||||||| |||||||    
T  26355000 cttcatgttcaacttcactacctttatccatgaaaa 26355035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 12581529 - 12581424
Alignment:
Q  26 tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca 125  Q
    ||||||||||| |||||   |||||| ||||||| ||||||||||||  | | |  |||| ||||||||||||||||||||||||| |||||| ||||||    
T  12581529 tctagcaagattaatag---caatagaaaacaaataacttttcaccatttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttca 12581433  T
Q  126 tgttcaatt 134  Q
    |||||||||    
T  12581432 tgttcaatt 12581424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 12497346 - 12497241
Alignment:
Q  26 tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca 125  Q
    ||||||||||| |||||   |||||| ||||||| ||||| ||||||  | | | ||||| |||||||||||||||||||| |||| |||||| ||||||    
T  12497346 tctagcaagattaatag---caatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttca 12497250  T
Q  126 tgttcaatt 134  Q
    |||||||||    
T  12497249 tgttcaatt 12497241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 12521211 - 12521106
Alignment:
Q  26 tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca 125  Q
    ||||||||||| |||||   |||||| ||||||| ||||| ||||||  | | | ||||| |||||||||||||||||||| |||| |||||| ||||||    
T  12521211 tctagcaagattaatag---caatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttca 12521115  T
Q  126 tgttcaatt 134  Q
    |||||||||    
T  12521114 tgttcaatt 12521106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 12519825 - 12519878
Alignment:
Q  81 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt 134  Q
    ||||| |||||||||||||||||||||||   |||||| |||||||||||||||    
T  12519825 tgaggaaaaacaaaaattgacaaccaagttaaaaggaaggcttcatgttcaatt 12519878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 12580114 - 12580167
Alignment:
Q  81 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt 134  Q
    ||||| ||||||||||||||||||||||||  |||||| || ||||||||||||    
T  12580114 tgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcctcatgttcaatt 12580167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 6397749 - 6397844
Alignment:
Q  59 aaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaa 154  Q
    ||||||||||||||  | |||  |||| ||| || ||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||| |||||    
T  6397749 aaaacttttcaccatttttttaggaggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaa 6397844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 6398382 - 6398280
Alignment:
Q  45 gcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactt 144  Q
    ||||||| ||||||| ||||||||||||    |||   ||| |||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |||    
T  6398382 gcaatagaaaacaaacaacttttcaccattgttttactaggaaaaacaaaaattaacaaccaattagcaaggaaggcttcatgttcaatttcactacctt 6398283  T
Q  145 tat 147  Q
    |||    
T  6398282 tat 6398280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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