View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13961_low_11 (Length: 224)
Name: NF13961_low_11
Description: NF13961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13961_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 33438115 - 33437917
Alignment:
| Q |
9 |
gagtgagatgaagaaaaaagagttaaatgcgtgcacaattatgcatatagcaaataggttttgatagaaaaaagacattatgcatatagctacttgatat |
108 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33438115 |
gagtgataggaagaaaaaagagttaaatgcgtgcacaattatgcatatagcaaataggttttgatagaaaaaagacattatgcatatagctacttgatat |
33438016 |
T |
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| Q |
109 |
tgttttatacggtttgaagatatatattgcacacaagatcaaaattaatcttcct-nnnnnnnntctaataaataagtgcacaattcactagtaagttg |
206 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
33438015 |
tgttttatacggtttgaagatatatattacacacaagatcaaaattaatcttcctaaacaaaaatctaataaataagtgcacaaatcactagtaagttg |
33437917 |
T |
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