View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13961_low_3 (Length: 422)

Name: NF13961_low_3
Description: NF13961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13961_low_3
NF13961_low_3
[»] chr3 (6 HSPs)
chr3 (1-422)||(4490747-4491169)
chr3 (38-108)||(42788367-42788439)
chr3 (32-145)||(4020095-4020210)
chr3 (48-132)||(44698231-44698317)
chr3 (33-110)||(45054385-45054463)
chr3 (32-117)||(34228288-34228373)
[»] chr6 (4 HSPs)
chr6 (33-150)||(10008191-10008309)
chr6 (33-101)||(17835022-17835091)
chr6 (32-178)||(5611097-5611245)
chr6 (33-100)||(27082309-27082377)
[»] chr2 (5 HSPs)
chr2 (33-131)||(43131774-43131874)
chr2 (46-132)||(6462605-6462693)
chr2 (73-148)||(38193677-38193753)
chr2 (30-145)||(13738396-13738513)
chr2 (35-150)||(27896463-27896580)
[»] chr7 (5 HSPs)
chr7 (60-150)||(47445352-47445443)
chr7 (33-110)||(30095318-30095394)
chr7 (33-110)||(39786489-39786567)
chr7 (60-132)||(18037864-18037937)
chr7 (75-126)||(34993148-34993200)
[»] scaffold0039 (1 HSPs)
scaffold0039 (33-101)||(30033-30102)
[»] chr4 (3 HSPs)
chr4 (37-110)||(51100063-51100138)
chr4 (33-99)||(34236178-34236246)
chr4 (33-150)||(48202483-48202603)
[»] chr8 (8 HSPs)
chr8 (33-104)||(30924209-30924280)
chr8 (33-81)||(13907406-13907455)
chr8 (33-132)||(18131190-18131290)
chr8 (60-117)||(40607325-40607381)
chr8 (33-101)||(11150921-11150989)
chr8 (31-140)||(17921692-17921804)
chr8 (30-101)||(43917582-43917654)
chr8 (47-145)||(44648939-44649039)
[»] chr1 (6 HSPs)
chr1 (32-145)||(13969100-13969215)
chr1 (33-117)||(34382663-34382747)
chr1 (76-132)||(31160768-31160825)
chr1 (37-132)||(33148145-33148242)
chr1 (33-101)||(36160566-36160635)
chr1 (33-132)||(32187052-32187152)
[»] chr5 (5 HSPs)
chr5 (67-132)||(2835634-2835700)
chr5 (32-132)||(16802025-16802126)
chr5 (32-104)||(28511192-28511266)
chr5 (33-145)||(6102827-6102940)
chr5 (33-110)||(29552324-29552401)


Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 4490747 - 4491169
Alignment:
Q  1 ataagaaaaatgttaatcaatatgtcagagatattggttaaacaatcaaaacaagtaagttttattaaaagatagtgtaattattattttatcaaaagta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4490747 ataagaaaaatgttaatcaatatgtcagagatattggttaaacaatcaaaacaaataagttttattaaaagatagtgtaattattattttatcaaaagta 4490846  T
Q  101 aaaatttatagttttaaacaaaatttctattttatgattccttaatcagttctttaaagacacctgttagcaagacacatggatgaaatagtaataattt 200  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || || |||||||||||||||    
T  4490847 aaaatttatatttttagacaaaatttctattttatgattccttaatcagttctctaaagacacctgttagcaagacacgtgaataaaatagtaataattt 4490946  T
Q  201 aataa-taatgtgacaaataagaaatgaattgaagtttggtacaataagaggaccatctttgcttgtatatcaattcaaaaatcaacaaagaaaatccgg 299  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4490947 aataaataatgtgacaaataagaaatgaattgaagtttggtacaataagaggaccatctttgcttgtatatcaattcaaaaatcaacaaagaaaatccgg 4491046  T
Q  300 cagattctgcaatgaaatctgtcaggatcttgctttccaaactgtcagatttcctaggaggattttgtatctccttgaatatgatgtccaccctattaaa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4491047 cagattctgcaatgaaatctgtcaggatcttgctttccaaactgtcagatttcctaggaggattttgtatctccttgaatatgatgtccaccctattaaa 4491146  T
Q  400 atgtgacatcctctctcattcat 422  Q
    |||||||||||||||||||||||    
T  4491147 atgtgacatcctctctcattcat 4491169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 42788439 - 42788367
Alignment:
Q  38 ttaaacaatcaaaacaagtaagttttattaaaaga--tagtgtaattattattttatcaaaagtaaaaattta 108  Q
    |||||||||||||||  |||||||||  ||||| |  || |||||||||||||||||||||||||||||||||    
T  42788439 ttaaacaatcaaaactggtaagtttttataaaaaaaataatgtaattattattttatcaaaagtaaaaattta 42788367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 4020095 - 4020210
Alignment:
Q  32 tattggttaaacaatcaaaacaagtaag-ttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttcta 129  Q
    ||||||||||  || ||||||||||||| |||||| |||| || ||||||| |||| || ||||||| ||| | |||||| ||| || ||||||||||||    
T  4020095 tattggttaagtaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttcta 4020194  T
Q  130 ttttatgattccttaa 145  Q
    |||   ||||||||||    
T  4020195 tttgtagattccttaa 4020210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 44698231 - 44698317
Alignment:
Q  48 aaaacaagtaagtttt-attaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctattt 132  Q
    ||||||| |||||||| || |||| || ||||||| ||||||||||||||||||| |  ||||| ||| || |||||||||||||||    
T  44698231 aaaacaaataagtttttatgaaaaaattgtgtaatcattattttatcaaaagtaacatcttatattttcaagacaaaatttctattt 44698317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 45054385 - 45054463
Alignment:
Q  33 attggttaaacaatcaaaacaagtaag-ttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttata 110  Q
    |||||||||||| | |||| ||||||| ||||||||||| |||||||||| |||| ||  |||||||||| | ||||||    
T  45054385 attggttaaacagttaaaagaagtaagattttattaaaaaatagtgtaataattagttagtcaaaagtaacagtttata 45054463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 34228373 - 34228288
Alignment:
Q  32 tattggttaaacaatcaaaacaagtaagttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa 117  Q
    |||||||||| |||| ||||| ||||| ||||  |||||  |  || ||||||||||| ||||||||| |||||||||| ||||||    
T  34228373 tattggttaagcaattaaaacgagtaactttttataaaaagtgatgaaattattatttaatcaaaagtcaaaatttatatttttaa 34228288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 10008191 - 10008309
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagtttt-attaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctat 130  Q
    ||||||||| ||| ||||| ||||||||||| |||||||  | |||||||||||| || |||||||||||   |||||| |||||| ||||||||||| |    
T  10008191 attggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaatttcttt 10008290  T
Q  131 tttatgattccttaatcagt 150  Q
    |||| |||||||||||||||    
T  10008291 ttta-gattccttaatcagt 10008309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 17835091 - 17835022
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagtttt-attaaaagatagtgtaattattattttatcaaaagtaa 101  Q
    |||||||||||| |||||||||| ||||||| || |||| || || ||||||||| || |||||||||||    
T  17835091 attggttaaacattcaaaacaagcaagttttcatgaaaaaatcgtataattattacttaatcaaaagtaa 17835022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 5611245 - 5611097
Alignment:
Q  32 tattggttaaacaatcaaaacaagtaagtttt-attaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttcta 129  Q
    |||||||||||||  ||||||||||||||||| || || |  | || |||||||||||| || |||||||| |  ||||| || ||| ||||||||||||    
T  5611245 tattggttaaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttcta 5611146  T
Q  130 ttttatgattccttaatcagttctttaaagacacctgttagcaagacac 178  Q
    |||   ||||||||||  | ||| |||||  |||| | |||||||||||    
T  5611145 tttatagattccttaacaatttcgttaaaagcaccggatagcaagacac 5611097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 27082309 - 27082377
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagtttt-attaaaagatagtgtaattattattttatcaaaagta 100  Q
    ||||||||||||| |||||||||||| |||| || ||||  | ||||||| ||||||| ||||||||||    
T  27082309 attggttaaacaaccaaaacaagtaaattttcatgaaaaagttgtgtaatgattatttgatcaaaagta 27082377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 43131874 - 43131774
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagtttt-attaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctat 130  Q
    |||| |||||||| ||||||||||||||||| || ||||| |||||||||||||| || |||||||||| ||| ||| | |||||| ||||||||| |||    
T  43131874 attgattaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaaatttttat 43131775  T
Q  131 t 131  Q
    |    
T  43131774 t 43131774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 6462693 - 6462605
Alignment:
Q  46 tcaaaacaagtaagttttattaaaaga-tagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctattt 132  Q
    ||||||||| ||||||||| ||||| | | || |||||||||||||||||||||||| | |||||| || ||| ||| |||||||||||    
T  6462693 tcaaaacaaataagttttaataaaaaagttgtataattattattttatcaaaagtaatattttatatttataagacagaatttctattt 6462605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 38193753 - 38193677
Alignment:
Q  73 tagtgtaattattattttatcaaaagtaaaaatttatagtttt-aaacaaaatttctattttatgattccttaatca 148  Q
    ||||||||||||||||| ||||||| |||||| ||| | |||| ||| ||||||||||||  | |||||||||||||    
T  38193753 tagtgtaattattatttcatcaaaaataaaaacttacatttttaaaataaaatttctattaaaagattccttaatca 38193677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 13738513 - 13738396
Alignment:
Q  30 gatattggttaaacaatcaaaacaagtaag-ttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttt-taaacaaaatttc 127  Q
    |||||||||||| ||  ||||||||||||| |||||| |||| || ||||||| |||| ||||||| |||||| |  ||||| |||  |||||||||||     
T  13738513 gatattggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaacatcttatattttcaaaacaaaatttt 13738414  T
Q  128 tattttatgattccttaa 145  Q
    |||||   ||||||||||    
T  13738413 tatttatagattccttaa 13738396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 27896463 - 27896580
Alignment:
Q  35 tggttaaacaatcaaaacaagtaagtttt-attaaaagatagtgtaattattattttatcaaaagtaaaaatttatagtt-ttaaacaaaatttctattt 132  Q
    ||||||||||| ||||| ||||||||||| |||||||  | |||||||||||| |  ||||||||||| |  ||||| || | ||||||| ||||||||     
T  27896463 tggttaaacaaccaaaataagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattc 27896562  T
Q  133 tatgattccttaatcagt 150  Q
    |  ||| |||||||||||    
T  27896563 ttggataccttaatcagt 27896580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 47445443 - 47445352
Alignment:
Q  60 ttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaaa-caaaatttctattttatgattccttaatcagt 150  Q
    |||||| |||| ||||| ||||||||| || |||||||||||||| ||||| ||| ||| |||||||||||||| | |||||||||| ||||    
T  47445443 ttttataaaaaaatagtttaattattacttcatcaaaagtaaaaacttatattttcaaagcaaaatttctatttaaggattccttaaccagt 47445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 30095318 - 30095394
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttata 110  Q
    ||||||||||||| |||||||||||| ||||| |||||||| |||||| ||||| |  ||||||||| |||| |||||    
T  30095318 attggttaaacaagcaaaacaagtaa-ttttaataaaagatggtgtaactattactaaatcaaaagttaaaacttata 30095394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 39786567 - 39786489
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagtttt--attaaaagatagtgtaattattattttatcaaaagtaaaaatttata 110  Q
    ||||||||| ||| |||||||| ||| ||||  |||||||| ||||||||||||||||| ||||||||| |||| |||||    
T  39786567 attggttaagcaaccaaaacaaataacttttttattaaaag-tagtgtaattattatttaatcaaaagttaaaacttata 39786489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 18037937 - 18037864
Alignment:
Q  60 ttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttt-taaacaaaatttctattt 132  Q
    ||||||||||| |   |||||||||||||| ||||||||||| |||||||| |||  ||||||||||| |||||    
T  18037937 ttttattaaaaaacgatgtaattattatttgatcaaaagtaacaatttatattttcaaaacaaaatttttattt 18037864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 34993200 - 34993148
Alignment:
Q  75 gtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaattt 126  Q
    ||||||||||||||||||||||||||| |  ||||| |||||| |||||||||    
T  34993200 gtgtaattattattttatcaaaagtaacatcttatatttttaagacaaaattt 34993148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 30102 - 30033
Alignment:
Q  33 attggttaaacaatcaaaacaagtaag-ttttattaaaagatagtgtaattattattttatcaaaagtaa 101  Q
    |||||||||||| |||||||||||||| |||||| ||||| | ||||||||||||||| || ||||||||    
T  30102 attggttaaacactcaaaacaagtaagtttttatgaaaagtttgtgtaattattatttaattaaaagtaa 30033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 51100138 - 51100063
Alignment:
Q  37 gttaaacaatcaaaacaagtaagtttt--attaaaagatagtgtaattattattttatcaaaagtaaaaatttata 110  Q
    |||||||||||||||||||||| ||||  |||||||  |||||||||||||| || ||||||||| |||| |||||    
T  51100138 gttaaacaatcaaaacaagtaacttttttattaaaaagtagtgtaattattacttaatcaaaagttaaaacttata 51100063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 34236178 - 34236246
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagttttat--taaaagatagtgtaattattattttatcaaaagt 99  Q
    ||||||||||||| |||||||||||| |||| |  ||||| ||||||||||||| | || |||||||||    
T  34236178 attggttaaacaaccaaaacaagtaattttttttataaaaaatagtgtaattatcacttaatcaaaagt 34236246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 48202483 - 48202603
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagttttattaa-aagatagtgtaattattattttatcaaaagtaaaaatttatagttttaaa--caaaatttcta 129  Q
    ||||||||| ||| ||||||| |||||||||  ||| ||| |||||||||||||| || |||||||| ||||| || |  |||| ||  |||||||||||    
T  48202483 attggttaagcaaacaaaacaggtaagtttttataagaaggtagtgtaattattacttcatcaaaagcaaaaacttttttttttcaaggcaaaatttcta 48202582  T
Q  130 ttttatgattccttaatcagt 150  Q
    ||| | |||| ||||| ||||    
T  48202583 tttaaggatttcttaaccagt 48202603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 30924280 - 30924209
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagttttattaaaagatagtgtaattattattttatcaaaagtaaaaa 104  Q
    |||||| |||||| ||||| |||||| ||||  ||||| ||||||||||||||| || ||||||||||||||    
T  30924280 attggtcaaacaaccaaaataagtaaatttttataaaaaatagtgtaattattacttaatcaaaagtaaaaa 30924209  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 13907455 - 13907406
Alignment:
Q  33 attggttaaacaatcaaaacaagtaag-ttttattaaaagatagtgtaat 81  Q
    |||||||||||| |||||| ||||||| |||||||||||||| |||||||    
T  13907455 attggttaaacagtcaaaagaagtaagattttattaaaagatggtgtaat 13907406  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 18131190 - 18131290
Alignment:
Q  33 attggttaaacaatcaaaacaagtaa-gttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctat 130  Q
    ||||||||| ||| ||||||||||||  |||||||||||| |||||||||||||| || ||||  ||| |||| ||||| ||| || ||||| |||||||    
T  18131190 attggttaagcaaccaaaacaagtaactttttattaaaag-tagtgtaattattacttaatcagtagtcaaaacttatattttcaagacaaattttctat 18131288  T
Q  131 tt 132  Q
    ||    
T  18131289 tt 18131290  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 40607325 - 40607381
Alignment:
Q  60 ttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa 117  Q
    |||||||||||| |||||||||||||| || ||||||||| |||| ||||| ||||||    
T  40607325 ttttattaaaag-tagtgtaattattacttaatcaaaagtcaaaacttatatttttaa 40607381  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 11150921 - 11150989
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagttttattaaaagatagtgtaattattattttatcaaaagtaa 101  Q
    ||||||||| || |||||| |||||||||||   |||| || ||||||| ||||||| |||||||||||    
T  11150921 attggttaagcattcaaaataagtaagtttttaaaaaaaattgtgtaatcattatttgatcaaaagtaa 11150989  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 17921804 - 17921692
Alignment:
Q  31 atattggttaaacaatcaaaacaagtaagtttt-attaaaa-gatagtgtaattattattttatcaaaagtaaaaatttatagtttt-aaacaaaatttc 127  Q
    |||||||||||| |  |||||||| ||| |||| ||||||| |||| |||||||||||  | ||| || ||||||||||| | |||| ||||||||| ||    
T  17921804 atattggttaaaaatccaaaacaattaaatttttattaaaatgatactgtaattattacatcatcgaatgtaaaaatttacatttttaaaacaaaatatc 17921705  T
Q  128 tattttatgattc 140  Q
    |||||||| ||||    
T  17921704 tattttattattc 17921692  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 43917582 - 43917654
Alignment:
Q  30 gatattggttaaacaatcaaaacaagtaagtttt-attaaaagatagtgtaattattattttatcaaaagtaa 101  Q
    |||||||||||| ||  |||||||||||| |||| || |||| || ||||||||||||||| || ||||||||    
T  43917582 gatattggttaagcatccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagtaa 43917654  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 44649039 - 44648939
Alignment:
Q  47 caaaacaagtaagtttt-attaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctattttatgattcctta 144  Q
    |||||||| |||||||| || ||||  | ||||||| |||| |||||||||||||| | |||||| ||| || |||||||||||||||   |||||||||    
T  44649039 caaaacaaataagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttctatttgtagattcctta 44648940  T
Q  145 a 145  Q
    |    
T  44648939 a 44648939  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 13969215 - 13969100
Alignment:
Q  32 tattggttaaacaatcaaaacaagtaag-ttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttcta 129  Q
    |||||||||| ||| ||||||||||||| |||||| |||| || ||||||| |||| || || |||||||| | |||||| ||| || ||||||||||||    
T  13969215 tattggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaacattttatattttcaagacaaaatttcta 13969116  T
Q  130 ttttatgattccttaa 145  Q
    |||   ||||||||||    
T  13969115 tttgtagattccttaa 13969100  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 34382747 - 34382663
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa 117  Q
    ||||||| |||||||||||||||||| ||||  |||||  | ||||||||||| ||| ||||||| | |||| ||||| ||||||    
T  34382747 attggtttaacaatcaaaacaagtaactttttataaaaagttgtgtaattattgtttaatcaaaaattaaaacttatatttttaa 34382663  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 31160768 - 31160825
Alignment:
Q  76 tgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctattt 132  Q
    ||||||||||| || ||||||||| |||||||||| |||||| ||||| |||||||||    
T  31160768 tgtaattattacttaatcaaaagtcaaaatttatatttttaagacaaattttctattt 31160825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 33148242 - 33148145
Alignment:
Q  37 gttaaacaatcaaaacaagtaag-ttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctattt 132  Q
    |||||||| |||||||||||||| |||||| |||| || ||||||| |||| || ||||||||||  |  ||||| |||||| |||||||||| ||||    
T  33148242 gttaaacattcaaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagcatcttatatttttaagacaaaatttcaattt 33148145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 36160566 - 36160635
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagtt-ttattaaaagatagtgtaattattattttatcaaaagtaa 101  Q
    ||||||||| |||| |||||||||||||| ||| |||||  |||||||||||||| ||| ||||| ||||    
T  36160566 attggttaagcaattaaaacaagtaagttcttaataaaaagtagtgtaattattactttgtcaaatgtaa 36160635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 32187052 - 32187152
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctatt 131  Q
    |||||||||  | ||||||||||||| ||||||| |||  | ||| ||||||||| | ||||||||||| |  ||||| ||| || ||||||||||||||    
T  32187052 attggttaagaattcaaaacaagtaaattttattgaaaagttgtgcaattattatctgatcaaaagtaacatcttatattttcaagacaaaatttctatt 32187151  T
Q  132 t 132  Q
    |    
T  32187152 t 32187152  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 2835700 - 2835634
Alignment:
Q  67 aaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaaa-caaaatttctattt 132  Q
    ||||| || ||||| ||||| ||||||||||||||||||||| | ||||||| ||||||||||||||    
T  2835700 aaaaggtaatgtaaatattactttatcaaaagtaaaaatttacatttttaaagcaaaatttctattt 2835634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 16802025 - 16802126
Alignment:
Q  32 tattggttaaacaatcaaaacaagtaagttttattaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctat 130  Q
    |||||||||| ||| |||||||| ||| ||||  |||||  || ||||||||||| || ||||||||| |||||||||| ||| || ||||| |||||||    
T  16802025 tattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattattacttaatcaaaagtcaaaatttatattttcaagacaaattttctat 16802124  T
Q  131 tt 132  Q
    ||    
T  16802125 tt 16802126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 28511266 - 28511192
Alignment:
Q  32 tattggttaaacaatcaaaacaagtaagttttattaaaaga--tagtgtaattattattttatcaaaagtaaaaa 104  Q
    |||||||||| ||| ||||||| |||||||||  ||||| |  |||||||||||||| || ||||||||||||||    
T  28511266 tattggttaagcaaccaaaacatgtaagtttttataaaaaaagtagtgtaattattaattcatcaaaagtaaaaa 28511192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 6102827 - 6102940
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagtttt-attaaaagatagtgtaattattattttatcaaaagtaaaaatttatagttttaa-acaaaatttctat 130  Q
    ||||||||| ||| ||||| |||||| |||| |||||||| || ||||||||||| || ||||||||| |||| ||||| ||| || ||||| |||||||    
T  6102827 attggttaagcaaccaaaataagtaactttttattaaaag-tattgtaattattacttaatcaaaagtcaaaacttatattttgaagacaaattttctat 6102925  T
Q  131 tttatgattccttaa 145  Q
    ||   ||||||||||    
T  6102926 ttatagattccttaa 6102940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 29552324 - 29552401
Alignment:
Q  33 attggttaaacaatcaaaacaagtaagtt-ttattaaaagatagtgtaattattattttatcaaaagtaaaaatttata 110  Q
    |||||||||||||||||||||||||| || ||  ||||| ||||||||| ||||| || |||||| || ||||||||||    
T  29552324 attggttaaacaatcaaaacaagtaatttgtttataaaatatagtgtaa-tattacttaatcaaatgtcaaaatttata 29552401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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