View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13961_low_9 (Length: 235)
Name: NF13961_low_9
Description: NF13961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13961_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 27499518 - 27499730
Alignment:
| Q |
1 |
caagataaaacaccttggagaatttttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaagtggata |
100 |
Q |
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| T |
27499518 |
caagataaaacaccttgaaatttttttgtggcaatccaaaatccttgatattgataggtgtgggttaaaatccaggctttttctgatggcaaggtgggta |
27499617 |
T |
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| Q |
101 |
tcaactccttgcattcttggtttaagtcatcatcctgcaagtatttggctacaagagagttttcatcacttgattttatcatggttgtgggtagtcaagg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| | |
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| T |
27499618 |
tcaactccttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatggttatgggtagtcaaag |
27499717 |
T |
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| Q |
201 |
ctaaatatagaaa |
213 |
Q |
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|| ||||| |||| |
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| T |
27499718 |
cttaatattgaaa |
27499730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 27544091 - 27544041
Alignment:
| Q |
69 |
aatccatgctttttctgatggcaaagtggatatcaactccttgcattcttg |
119 |
Q |
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| T |
27544091 |
aatccatcctttttctaatggcaatgtggatatcaactccttgcattcttg |
27544041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 11439548 - 11439716
Alignment:
| Q |
1 |
caagataaaacaccttggagaatttttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaagtggata |
100 |
Q |
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| T |
11439548 |
caagataaaacaccttgaagaattctcgtgccaatccaaaatccttgatattgatgaaagtgggtactgatccatcctttttctaatggtaaggtttgta |
11439647 |
T |
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| Q |
101 |
tcaactccttgcattcttggtttaagtcatcatcctgcaagtatttggctacaagagagttttcatcac |
169 |
Q |
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| T |
11439648 |
ttaactccttgcattctttgcctaactcatcttcttgcaagtattttggcacaagagagttttcatcac |
11439716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 11317972 - 11318091
Alignment:
| Q |
1 |
caagataaaacaccttggagaatttttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaagtggata |
100 |
Q |
| |
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||||||||| |||||||||||| |||||| || |||||||||||||||||||||| ||||| | |||||| |||||||| ||||||| |||| || |
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| T |
11317972 |
caagataaagtaccttggagaatccttgtggtaagccaaaatccttgatattgatggaagtgggatgtaatccaacctttttctaatggcaaggtgggta |
11318071 |
T |
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| Q |
101 |
tcaactccttgcattcttgg |
120 |
Q |
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|||||||||| ||||||||| |
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| T |
11318072 |
tcaactccttacattcttgg |
11318091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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