View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13962_low_2 (Length: 370)

Name: NF13962_low_2
Description: NF13962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13962_low_2
NF13962_low_2
[»] chr3 (7 HSPs)
chr3 (52-352)||(3211272-3211572)
chr3 (227-290)||(3195535-3195598)
chr3 (52-176)||(3207954-3208076)
chr3 (52-181)||(3191037-3191164)
chr3 (1-54)||(3212029-3212082)
chr3 (312-349)||(3195270-3195307)
chr3 (1-54)||(14071948-14072005)
[»] chr1 (2 HSPs)
chr1 (1-54)||(52755577-52755629)
chr1 (1-54)||(17986380-17986437)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-54)||(77649-77706)
[»] chr6 (1 HSPs)
chr6 (1-54)||(20105869-20105926)
[»] chr7 (1 HSPs)
chr7 (1-54)||(17946535-17946592)
[»] chr5 (1 HSPs)
chr5 (1-54)||(17408946-17409003)
[»] chr4 (1 HSPs)
chr4 (1-54)||(7197020-7197077)
[»] chr2 (1 HSPs)
chr2 (1-54)||(23704072-23704129)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 52 - 352
Target Start/End: Complemental strand, 3211572 - 3211272
Alignment:
Q  52 tgatagttggtttatattgttgagagtctttccaaagctcatgtgcatacatcaaacctaatcatgacgtagaaaaatgaannnnnnncagtggtaaagg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||||||    
T  3211572 tgatagttggtttatattgttgagagtctttccaaagctcatgtgcatacatcaaacctaatcataacgtagaaaaatgaatttttttcagtggtaaagg 3211473  T
Q  152 ttgtattttcccactggacgtgccatttttggttgatggagagcctttctttttctgtttttgtcatttgtggtgtattggttgtagtggatgcttttct 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3211472 ttgtattttcccactggacgtgccatttttggttgatggagagcctttctttttctgtttttgtcatttgtggtgtattggttgtagtggatgcttttct 3211373  T
Q  252 acaaacagtataataaggatatttcaatttgctatcaaaacattaacttatataaaactaaaatagtattgatatttagcttcatacctaatgggatttt 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3211372 acaaacagtataataaggatatttcaatttgctatcaaaacattaacttatataaaactaaaatagtattgatatttagcttcatacctaatgggatttt 3211273  T
Q  352 g 352  Q
    |    
T  3211272 g 3211272  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 3195598 - 3195535
Alignment:
Q  227 tattggttgtagtggatgcttttctacaaacagtataataaggatatttcaatttgctatcaaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3195598 tattggttgtagtggatgcttttctacaaacagtataataaggatatttcaatttgctatcaaa 3195535  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 3208076 - 3207954
Alignment:
Q  52 tgatagttggtttatattgttgagagtctttccaaagctcatgtgcatacatcaaacctaatcatgacgtagaaaaatgaannnnnnncagtggtaaagg 151  Q
    ||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||       || |||||||||    
T  3208076 tgatagttgctttatattgttgagactcattccatagctcatgtgcatacatcaaacctaatcatgacctaggaaaatgaa--cttttcaatggtaaagg 3207979  T
Q  152 ttgtattttcccactggacgtgcca 176  Q
    ||||||| ||||||||  |||||||    
T  3207978 ttgtattgtcccactgagcgtgcca 3207954  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 3191164 - 3191037
Alignment:
Q  52 tgatagttggtttatattgttgagagtctttccaaagctcatgtgcatacatcaaacctaatcatgacgtagaaaaatgaannnnnnncagtggtaaagg 151  Q
    ||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||  ||| ||||| ||       || |||||||||    
T  3191164 tgatagttgctttatattgttgagactcattccatagctcatgtgcatacatcaaacctaatcatgatctaggaaaataaa--tttttcaatggtaaagg 3191067  T
Q  152 ttgtattttcccactggacgtgccattttt 181  Q
    ||||||| |||||||| |||||||| ||||    
T  3191066 ttgtattgtcccactgaacgtgccaatttt 3191037  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3212082 - 3212029
Alignment:
Q  1 aaccctgaaacttggcacggccgtgtgggagcacgggccgtgctacctctctga 54  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  3212082 aaccctgaagtttggcacggccgtgtgggagcacgggccgtgctacctctctga 3212029  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 3195307 - 3195270
Alignment:
Q  312 aaatagtattgatatttagcttcatacctaatgggatt 349  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  3195307 aaatagtattgatatttaacttcatacctaatgagatt 3195270  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14071948 - 14072005
Alignment:
Q  1 aaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 54  Q
    ||||||||| ||||||||||||||    |||||||||| |||||||| ||||||||||    
T  14071948 aaccctgaagcttggcacggccgtgctagtgggagcacaggccgtgccacctctctga 14072005  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 52755577 - 52755629
Alignment:
Q  1 aaccctgaaacttggcacggccgtgtgggagcacgggccgtgctacctctctga 54  Q
    ||||||||| ||||||||||||  ||||||||||||||||||| ||||||||||    
T  52755577 aaccctgaagcttggcacggcca-gtgggagcacgggccgtgccacctctctga 52755629  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17986437 - 17986380
Alignment:
Q  1 aaccctgaaacttggcacggccgtg----tgggagcacgggccgtgctacctctctga 54  Q
    ||||||||| |||||||||||||||    |||||||||||||||||| ||||||||||    
T  17986437 aaccctgaagcttggcacggccgtgccagtgggagcacgggccgtgccacctctctga 17986380  T

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Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 77706 - 77649
Alignment:
Q  1 aaccctgaaacttggcacggccgtg----tgggagcacgggccgtgctacctctctga 54  Q
    ||||||||| |||||||||||||||    |||||||||||||||||| ||||||||||    
T  77706 aaccctgaagcttggcacggccgtgccagtgggagcacgggccgtgccacctctctga 77649  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20105869 - 20105926
Alignment:
Q  1 aaccctgaaacttggcacggccgtg----tgggagcacgggccgtgctacctctctga 54  Q
    ||||||||| |||||||||||||||    |||||||||||||||||| ||||||||||    
T  20105869 aaccctgaagcttggcacggccgtgctagtgggagcacgggccgtgccacctctctga 20105926  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17946592 - 17946535
Alignment:
Q  1 aaccctgaaacttggcacggccgtg----tgggagcacgggccgtgctacctctctga 54  Q
    ||||||||| |||||||||||||||    ||||||||||||| |||| ||||||||||    
T  17946592 aaccctgaagcttggcacggccgtgccactgggagcacgggctgtgccacctctctga 17946535  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17408946 - 17409003
Alignment:
Q  1 aaccctgaaacttggcacggccgtg----tgggagcacgggccgtgctacctctctga 54  Q
    ||||||||| ||||||||| |||||    |||||||||||||||||| ||||||||||    
T  17408946 aaccctgaagcttggcacgaccgtgctagtgggagcacgggccgtgccacctctctga 17409003  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7197077 - 7197020
Alignment:
Q  1 aaccctgaaacttggcacggccgtg----tgggagcacgggccgtgctacctctctga 54  Q
    ||||||||| ||||||| |||||||    |||||||||||||||||| ||||||||||    
T  7197077 aaccctgaagcttggcatggccgtgccagtgggagcacgggccgtgccacctctctga 7197020  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23704129 - 23704072
Alignment:
Q  1 aaccctgaaacttggcacggccgtg----tgggagcacgggccgtgctacctctctga 54  Q
    ||||||||| |||||||||||||||    |||||||||||||||||| || |||||||    
T  23704129 aaccctgaagcttggcacggccgtgccagtgggagcacgggccgtgccacttctctga 23704072  T

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