View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13962_low_3 (Length: 334)

Name: NF13962_low_3
Description: NF13962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13962_low_3
NF13962_low_3
[»] chr4 (16 HSPs)
chr4 (178-316)||(31717887-31718025)
chr4 (178-316)||(31725112-31725250)
chr4 (178-308)||(31702557-31702687)
chr4 (13-118)||(31717722-31717827)
chr4 (13-118)||(31724947-31725052)
chr4 (13-112)||(31702392-31702491)
chr4 (198-299)||(31708548-31708649)
chr4 (198-299)||(31697463-31697564)
chr4 (189-289)||(31733277-31733377)
chr4 (13-98)||(31708281-31708366)
chr4 (13-98)||(31697190-31697275)
chr4 (189-289)||(31740833-31740933)
chr4 (189-289)||(31746178-31746278)
chr4 (13-96)||(31733119-31733202)
chr4 (13-96)||(31746020-31746103)
chr4 (13-95)||(31740676-31740758)
[»] chr8 (4 HSPs)
chr8 (188-289)||(23560260-23560361)
chr8 (198-262)||(15697123-15697187)
chr8 (68-96)||(19551458-19551486)
chr8 (68-96)||(19581202-19581230)
[»] chr1 (1 HSPs)
chr1 (189-259)||(21936640-21936710)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 31717887 - 31718025
Alignment:
Q  178 caatggcttattgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttactgttaga 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31717887 caatggcttattgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttactgttaga 31717986  T
Q  278 gattatatgtgggaagaaaaatcgagtgtgtcatcgtac 316  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  31717987 gattatatgtggcaagaaaaatcgagtgtgtcatcgtac 31718025  T

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Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 31725112 - 31725250
Alignment:
Q  178 caatggcttattgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttactgttaga 277  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31725112 caatgtcttattgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttattgttaga 31725211  T
Q  278 gattatatgtgggaagaaaaatcgagtgtgtcatcgtac 316  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31725212 gattatatgtgggaagaaaaatcgagtgtgtcatcgtac 31725250  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 31702557 - 31702687
Alignment:
Q  178 caatggcttattgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttactgttaga 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  31702557 caatggcttattgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatcggatgttttcagctttggtattttactgttaga 31702656  T
Q  278 gattatatgtgggaagaaaaatcgagtgtgt 308  Q
    ||||||| |||||||||||||| ||| ||||    
T  31702657 gattataagtgggaagaaaaatagagagtgt 31702687  T

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Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 31717722 - 31717827
Alignment:
Q  13 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacaaatagaattgttgggacatagtgagtgtttaactatccagaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31717722 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacaaatagaattgttgggacttagtgagtgtttaactatccagaa 31717821  T
Q  113 tcagtc 118  Q
    ||||||    
T  31717822 tcagtc 31717827  T

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Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 31724947 - 31725052
Alignment:
Q  13 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacaaatagaattgttgggacatagtgagtgtttaactatccagaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31724947 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacaaatagaattgttgggacgtagtgagtgtttaactatccagaa 31725046  T
Q  113 tcagtc 118  Q
    ||||||    
T  31725047 tcagtc 31725052  T

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Target: chr4; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 31702392 - 31702491
Alignment:
Q  13 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacaaatagaattgttgggacatagtgagtgtttaactatccagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31702392 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacagatagaattgttgggacatagtgagtgtttaactatccagaa 31702491  T

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Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 31708548 - 31708649
Alignment:
Q  198 tacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttactgttagagattatatgtgggaagaaaa 297  Q
    |||||||||||||||||||| |||| ||||||||||||  | ||||| || ||||||||||||||| |||||||  ||||||||||||||||||| ||||    
T  31708548 tacatggcaccagagtatgccattggtggacaattttcaatcaaatcagatgttttcagctttggtgttttactactagagattatatgtgggaacaaaa 31708647  T
Q  298 at 299  Q
    ||    
T  31708648 at 31708649  T

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Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 31697463 - 31697564
Alignment:
Q  198 tacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttactgttagagattatatgtgggaagaaaa 297  Q
    |||||||| |||||||||||| ||||||| ||||||||  | ||||| |||||||||||||||||| ||||||| || ||||||||||| ||||| ||||    
T  31697463 tacatggctccagagtatgctgttgatgggcaattttcaatcaaatcagacgttttcagctttggtgttttactattggagattatatgcgggaacaaaa 31697562  T
Q  298 at 299  Q
    ||    
T  31697563 at 31697564  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 31733277 - 31733377
Alignment:
Q  189 tgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttactgttagagattatatgtg 288  Q
    ||||||||||||||||||||||| |||||| ||||||||  |||||| |||||||| |||||||| ||||| || |||||| | || |||||||||||||    
T  31733277 tgcagtgggtacatggcaccagaatatgctgttgatggattattttcggtgaaatctgacgtttttagcttcggcattttattattggagattatatgtg 31733376  T
Q  289 g 289  Q
    |    
T  31733377 g 31733377  T

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Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 31708281 - 31708366
Alignment:
Q  13 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacaaatagaattgttgggacatagtgagtgt 98  Q
    |||||||||||||||| |||||||| ||||||||||| |||| ||||||||||| ||| ||||| | ||||| |||||||||||||    
T  31708281 aatatcagattttggaatggctagatcttttggaggagaccagattgaaggaaatacacatagagtagttggaacatagtgagtgt 31708366  T

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Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 31697190 - 31697275
Alignment:
Q  13 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacaaatagaattgttgggacatagtgagtgt 98  Q
    |||||||||||||||| |||| ||| ||||||||||| |||| ||||||||||| ||||||||| | ||||| ||||||| |||||    
T  31697190 aatatcagattttggaatggccagatcttttggaggagaccagattgaaggaaatacaaatagagtagttggaacatagtaagtgt 31697275  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 31740833 - 31740933
Alignment:
Q  189 tgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttactgttagagattatatgtg 288  Q
    |||||||| ||||||||||| ||||||||| |||||| |   ||||| |||||||| || ||||| |||||||| |||||| ||||||| |||||| |||    
T  31740833 tgcagtggatacatggcacccgagtatgctgttgatgaattgttttcggtgaaatctgatgtttttagctttggaattttattgttagaaattatacgtg 31740932  T
Q  289 g 289  Q
    |    
T  31740933 g 31740933  T

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Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 31746178 - 31746278
Alignment:
Q  189 tgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttactgttagagattatatgtg 288  Q
    |||||||||||||||||||||||||||||| ||||||||   ||||| ||||| || |||||||  ||||| || |||||| | || |||||||| ||||    
T  31746178 tgcagtgggtacatggcaccagagtatgctgttgatggattgttttcagtgaagtctgacgtttatagcttcggaattttattattggagattatctgtg 31746277  T
Q  289 g 289  Q
    |    
T  31746278 g 31746278  T

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Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 31733119 - 31733202
Alignment:
Q  13 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacaaatagaattgttgggacatagtgagt 96  Q
    ||||||||||||||||   |||||||||||||||||| ||||| | |||||||||||||| |||||  |||| || ||||||||    
T  31733119 aatatcagattttggaacagctagaacttttggaggagaccaattcgaaggaaacacaaagagaataattggaacttagtgagt 31733202  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 31746020 - 31746103
Alignment:
Q  13 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacaaatagaattgttgggacatagtgagt 96  Q
    ||||||||||||||||   |||||||||||||||||| |||||||  ||||||| ||| | |||||  ||||||| ||||||||    
T  31746020 aatatcagattttggaacagctagaacttttggaggagaccaaatcaaaggaaaaacagaaagaataattgggacttagtgagt 31746103  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 31740676 - 31740758
Alignment:
Q  13 aatatcagattttggattggctagaacttttggaggaaaccaaattgaaggaaacacaaatagaattgttgggacatagtgag 95  Q
    ||||||||||||||||   ||||||||||| |||||| ||||||| ||||||||||  || |||||  ||||||| |||||||    
T  31740676 aatatcagattttggaacagctagaactttcggaggagaccaaatcgaaggaaacaggaagagaataattgggacttagtgag 31740758  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 23560361 - 23560260
Alignment:
Q  188 ttgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttggtattttactgttagagattatatgt 287  Q
    ||||||||| |||||||||||||| ||||||   |||||||  ||||| |||||||| || || ||||| ||||| |||||  || | ||||||||||||    
T  23560361 ttgcagtggctacatggcaccagaatatgctgcggatggacttttttctgtgaaatctgatgtattcagttttggaattttgatgctggagattatatgt 23560262  T
Q  288 gg 289  Q
    ||    
T  23560261 gg 23560260  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 15697187 - 15697123
Alignment:
Q  198 tacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctttgg 262  Q
    |||||||| ||||| |||||||| | ||||  |||||| ||||||||||| ||||||||||||||    
T  15697187 tacatggctccagaatatgctatggctggattattttcagtgaaatccgatgttttcagctttgg 15697123  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 19551486 - 19551458
Alignment:
Q  68 acaaatagaattgttgggacatagtgagt 96  Q
    |||||||||||||||||||||||||||||    
T  19551486 acaaatagaattgttgggacatagtgagt 19551458  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 19581202 - 19581230
Alignment:
Q  68 acaaatagaattgttgggacatagtgagt 96  Q
    |||||||||||||||||||||||||||||    
T  19581202 acaaatagaattgttgggacatagtgagt 19581230  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 21936640 - 21936710
Alignment:
Q  189 tgcagtgggtacatggcaccagagtatgctattgatggacaattttccgtgaaatccgacgttttcagctt 259  Q
    |||||||| |||||| | |||||||||||  |||||||||| ||||| ||||| ||||| ||||| |||||    
T  21936640 tgcagtggttacatgtctccagagtatgcccttgatggacatttttcagtgaagtccgatgtttttagctt 21936710  T

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