View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13962_low_6 (Length: 220)
Name: NF13962_low_6
Description: NF13962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13962_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 5139147 - 5139330
Alignment:
| Q |
19 |
tgggggagcgatagaaaagacaacgagttaatgtttcaaaactataagagaaggagaaatcaaaatatttaagacattaagaggtacatgaggcttaact |
118 |
Q |
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| T |
5139147 |
tgggggagcgatagaaaagacaacgagttaatgtttcagaactataagagaaggagaaatcaaaacatttaagacattaagaggtatatgaggcttaact |
5139246 |
T |
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| Q |
119 |
aatcacacattaaatcaaacaattttccactcaagtgggagctcccaccacctatccttcatccaaacaccaggatcccgcttc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5139247 |
aatcacacattaaatcaaacaattttccactcaagtgtgagctcccaccacctatccttcatccaaacaccaggatcccgcttc |
5139330 |
T |
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