View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13963_high_2 (Length: 771)
Name: NF13963_high_2
Description: NF13963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13963_high_2 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 360 - 753
Target Start/End: Original strand, 3508791 - 3509182
Alignment:
| Q |
360 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3508791 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
3508890 |
T |
|
| Q |
460 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
559 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3508891 |
gaaaacataacatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
3508990 |
T |
|
| Q |
560 |
aaaacaaaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
659 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3508991 |
aaa--caaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
3509088 |
T |
|
| Q |
660 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatcatgagcaaaattagccccttgttctagtaatcttgaatgagttaaa |
753 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3509089 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatcatgagcaaaatcagccccttgttctagtaatcttgaatgagttaaa |
3509182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 3508678 - 3508728
Alignment:
| Q |
228 |
ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3508678 |
ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
3508728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 669 - 735
Target Start/End: Complemental strand, 34128456 - 34128390
Alignment:
| Q |
669 |
aattctattttaacgggccatatttgtatgagtttaatcatgagcaaaattagccccttgttctagt |
735 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || ||||| |||||||| || |||||||||| |
|
|
| T |
34128456 |
aattctatttaaacgggccatatttttatgagtgcaaccatgaataaaattagtccattgttctagt |
34128390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 669 - 735
Target Start/End: Complemental strand, 34137077 - 34137011
Alignment:
| Q |
669 |
aattctattttaacgggccatatttgtatgagtttaatcatgagcaaaattagccccttgttctagt |
735 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || ||||| |||||||| || |||||||||| |
|
|
| T |
34137077 |
aattctatttaaacgggccatatttttatgagtgcaaccatgaataaaattagtccattgttctagt |
34137011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 34518759 - 34518725
Alignment:
| Q |
243 |
ttctatactttgaagaacaaaaacaaaatacatag |
277 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
34518759 |
ttctatactttgaagaacaaaatcaaaatacatag |
34518725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 360 - 753
Target Start/End: Original strand, 9322 - 9713
Alignment:
| Q |
360 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
459 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9322 |
caatcttaacaaaattatcattaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
9421 |
T |
|
| Q |
460 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
559 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9422 |
gaaaatgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttaaaacgtaaattg |
9521 |
T |
|
| Q |
560 |
aaaacaaaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
659 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9522 |
aaa--caaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
9619 |
T |
|
| Q |
660 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatcatgagcaaaattagccccttgttctagtaatcttgaatgagttaaa |
753 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9620 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatcatgagcaaaatcagccccttgttctagtaatcttgaatgagttaaa |
9713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 8975 - 9240
Alignment:
| Q |
8 |
tatgtgctactagatattactagctagtatttattagagtaatatataataagattagcaagaaagtaagaaaacaaaaggaagcatagagcaaaggaag |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8975 |
tatgtgccactagatattactagctagtatttattagagtaatat--aataagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaag |
9072 |
T |
|
| Q |
108 |
tgattggcatgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaattattagta |
207 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9073 |
tgattggcgtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaattattagta |
9172 |
T |
|
| Q |
208 |
accggttccnnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
278 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9173 |
accggttcctattcttt---ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
9240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 360 - 753
Target Start/End: Complemental strand, 5538155 - 5537764
Alignment:
| Q |
360 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
459 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5538155 |
caatcttgacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
5538056 |
T |
|
| Q |
460 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
559 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5538055 |
gaaaacataacatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
5537956 |
T |
|
| Q |
560 |
aaaacaaaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
659 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5537955 |
aaa--caaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
5537858 |
T |
|
| Q |
660 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatcatgagcaaaattagccccttgttctagtaatcttgaatgagttaaa |
753 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5537857 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatcatgagcaaaactagccccttgttctagtaatcttgaatgagttaaa |
5537764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 5538506 - 5538237
Alignment:
| Q |
8 |
tatgtgctactagatattactagctagtatttattagagtaatatata--ataagattagcaagaaagtaagaaaacaaaaggaagcatagagcaaa-gg |
104 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
5538506 |
tatgtgccattagatattactagctagtatttattagagtaatatatataataagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaagg |
5538407 |
T |
|
| Q |
105 |
aagtgattggcatgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaattatta |
204 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5538406 |
aagtgattg-cgtgtggaaataaacatccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagctagtgggagaattatta |
5538308 |
T |
|
| Q |
205 |
gtaaccggttccnnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
278 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5538307 |
gtaaccagttcctattcctt---ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
5538237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 360 - 753
Target Start/End: Original strand, 16420610 - 16421001
Alignment:
| Q |
360 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
459 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16420610 |
caatcttaacaaaattatcattaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
16420709 |
T |
|
| Q |
460 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
559 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16420710 |
gaaaatgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttaaaacgtaaattg |
16420809 |
T |
|
| Q |
560 |
aaaacaaaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
659 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16420810 |
aaa--caaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
16420907 |
T |
|
| Q |
660 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatcatgagcaaaattagccccttgttctagtaatcttgaatgagttaaa |
753 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16420908 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatcatgagcaaaatcagccccttgttctagtaatcttgaatgagttaaa |
16421001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 16420263 - 16420528
Alignment:
| Q |
8 |
tatgtgctactagatattactagctagtatttattagagtaatatataataagattagcaagaaagtaagaaaacaaaaggaagcatagagcaaaggaag |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16420263 |
tatgtgccactagatattactagctagtatttattagagtaatat--aataagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaag |
16420360 |
T |
|
| Q |
108 |
tgattggcatgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaattattagta |
207 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16420361 |
tgattggcgtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaattattagta |
16420460 |
T |
|
| Q |
208 |
accggttccnnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
278 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16420461 |
accggttcctattcttt---ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
16420528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 361 - 753
Target Start/End: Original strand, 28383210 - 28383596
Alignment:
| Q |
361 |
aatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgtag |
460 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||| | || || |||||||| |
|
|
| T |
28383210 |
aatcttaacatagttatcatcaccaagtaagaatcctactaatatttttattgtcctttttattattggagaatcaaaatcacccctcttatttttgtag |
28383309 |
T |
|
| Q |
461 |
aaaacgtagcatgtagagtccttaaactttttctctcttacaaa--cctatgttataattattattatgaccttaaagtagtaattttg-aaacgtaaat |
557 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| || ||| ||| | |||||| ||||||||| || |||||||||||||||||| ||| | ||| |
|
|
| T |
28383310 |
aaaatgtagcatgtagagtccttaaactctttcacttttataaatccttatgtt---cttattattacgatcttaaagtagtaattttgaaaatttgaat |
28383406 |
T |
|
| Q |
558 |
tgaaaacaaaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcag |
657 |
Q |
| |
|
|| ||| |||||||||| |||| |||| |||||||||||| ||||||| |||||||||| ||| | |||||| ||||| ||| |||||| | | || |
|
|
| T |
28383407 |
tg--aacgaaaagatggggttaaacaatcagtgttgctttgttgaattttattccaattttca-ttacaactaaaa-ttatacttg-atcattctttaag |
28383501 |
T |
|
| Q |
658 |
tattttgatgaaattctattttaacgggccatatttgtatgagtttaatcatgagcaaaattagccccttgttctagtaatcttgaatgagttaaa |
753 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||| ||||||||||| |||||||||||| |||||| ||||||||||||| || |||||||||| |
|
|
| T |
28383502 |
tattttgaagaaattctatttcaactggccatatttttatgagtttaaccatgagcaaaatcagcccc-tgttctagtaatcctggatgagttaaa |
28383596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 403 - 753
Target Start/End: Original strand, 28387875 - 28388219
Alignment:
| Q |
403 |
tattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgtagaaaacgtagcatgtagagtccttaaactttttctctcttaca |
502 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||| | | || || |||| ||||||||||||||||||||||| ||||||| |||| || ||| | |
|
|
| T |
28387875 |
tatttttattgtcctttttattattggagaatcaaaattacccctcttatttttctagaaaacgtagcatgtagagtc-ttaaactctttcacttttata |
28387973 |
T |
|
| Q |
503 |
aacc--tatgttataattattattatgaccttaaagtagtaattttgaaacgta-aattgaaaacaaaaagatgggattaagaaatcgatgttgctttgt |
599 |
Q |
| |
|
|| | |||||| | ||||||||||| ||||||||||||||||||||| | ||||||| | |||||||||| |||| |||| ||||||||||| |
|
|
| T |
28387974 |
aatccttatgttct---tattattatgatcttaaagtagtaattttgaaaatttgaattgaa--cgaaaagatggggttaaacaatcagtgttgctttgt |
28388068 |
T |
|
| Q |
600 |
taaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagtattttgatgaaattctattttaacgggccatatttgtatga |
699 |
Q |
| |
|
| ||||||| |||||||||||||| | |||||| ||||| |||| ||||| | | |||||||||| |||||||||||| ||| |||||||||| ||||| |
|
|
| T |
28388069 |
tgaattttattccaattttcatttacaactaaaa-ttatacttga-tcattctttaagtattttgaagaaattctatttcaactggccatatttttatga |
28388166 |
T |
|
| Q |
700 |
gtttaatcatgagcaaaattagccccttgttctagtaatcttgaatgagttaaa |
753 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
28388167 |
gtttaaccatgagcaaaattag-cccttgttctagtaatcctggatgagttaaa |
28388219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 28387571 - 28387621
Alignment:
| Q |
361 |
aatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttat |
411 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
28387571 |
aatcttaacatagttatcatcaccaagtaagaatcctattaatatttttat |
28387621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 8e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 35 - 192
Target Start/End: Original strand, 19932296 - 19932453
Alignment:
| Q |
35 |
tatttattagagtaatatataataagattagcaagaaagtaagaaaacaaaaggaagcatagagcaaaggaagtgattggcatgtggaaataaacatcca |
134 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||| |||||| | ||||||||||||||||| |
|
|
| T |
19932296 |
tatttattaaagtaatatataataagattagcaataaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactagtggaaataaacatcca |
19932395 |
T |
|
| Q |
135 |
cgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19932396 |
cgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg |
19932453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 8e-51; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 35 - 192
Target Start/End: Original strand, 18901508 - 18901672
Alignment:
| Q |
35 |
tatttattagagtaatatataataagattagcaagaaagtaagaaaacaaaaggaagcatagagcaaaggaagtgattggcatgtggaaa-------taa |
127 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||| | ||||||| ||| |
|
|
| T |
18901508 |
tatttattaaagtaatatataataagattagcaagaaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactggtggaaataaacattaa |
18901607 |
T |
|
| Q |
128 |
acatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18901608 |
acatccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg |
18901672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 51784783 - 51784714
Alignment:
| Q |
121 |
gaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtg |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51784783 |
gaaataaacat--acgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg |
51784714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 51784833 - 51784794
Alignment:
| Q |
35 |
tatttattagagtaatatataataagattagcaagaaagt |
74 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51784833 |
tatttattaaagtaatatataataagattagcaagaaagt |
51784794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 18901455 - 18901487
Alignment:
| Q |
16 |
actagatattactagctagtatttattagagta |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18901455 |
actagatattactagctagtatttattagagta |
18901487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 37940512 - 37940370
Alignment:
| Q |
50 |
tatataataagattagcaagaaagtaagaaaacaaaaggaagcatagagcaaaggaagtgattggcatgtggaaataaacatccacgtttcttcccaatc |
149 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||||| ||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
37940512 |
tatataataagattagcaagaaagtaggtaagcaaaaagaagcataggaaaaaggaactgattaactagtggaaataaacatccacgtttcttcccaatc |
37940413 |
T |
|
| Q |
150 |
ccattttccactatgttccatattgttaggaaataagttagtg |
192 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37940412 |
tcattttccactatgttccatatttttaggaaataagttagtg |
37940370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 37940590 - 37940550
Alignment:
| Q |
8 |
tatgtgctactagatattactagctagtatttattagagta |
48 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37940590 |
tatgtgccactagatattactagctagtatttattagagta |
37940550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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