View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13963_low_1 (Length: 884)
Name: NF13963_low_1
Description: NF13963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13963_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 737; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 16 - 875
Target Start/End: Original strand, 44828177 - 44829036
Alignment:
| Q |
16 |
acaaccgtgcaaaggacaatcaaagatctacnnnnnnnttacaaaaataaagacacacaatataatcattatcttattatagacaacaatattgtggtgn |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828177 |
acaaccgtgcaaaggacaatcaaagatctacaaaaaaattacaaaaataaagacacacaatataatcattatcttattatagacaacaatattgtggtga |
44828276 |
T |
|
| Q |
116 |
nnnnnn-ggcaaaatattgatannnnnnncttgtatttaccatgcaacgacgacagtaaaagttgtcaaaagtatctaaagagacactcaagcttttgtt |
214 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828277 |
aaaaaaaggcaaaatattgatatttttttcttgtatttaccatgcaacgacgacagtaaaagttgtcaaaagtatctaaagagacactcaagcttttgtt |
44828376 |
T |
|
| Q |
215 |
caaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctgcatattttgattgaga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828377 |
caaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctgcatattttgattgaga |
44828476 |
T |
|
| Q |
315 |
acatttgtccatgacataaaattagctgctcgtacgcaattaatacaacacatatcacaaagaaacttatatttgtaatacatattagaattaacaatca |
414 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44828477 |
acatttgtccatgacataaaattagctgctcatacgtaattaatacaacacatatcacaaagaaacttatttttgtaatacatattagaattaacaatca |
44828576 |
T |
|
| Q |
415 |
tcaaagctatattaatcttgtaaattactctacgttacctgaatttctgaactggtacctccgatgacatccttaacaatactcaacacttcctcagtta |
514 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828577 |
tcaaagctatattaatcttgtaaattactctacattacctgaatttctgaactggtacctccgatgacatccttaacaatactcaacacttcctcagtta |
44828676 |
T |
|
| Q |
515 |
aaccatgttcatcaaataccgtcctaatatattaaatagtcacaagataatatgtttagttaaggagaaacttaaattattttaatgaagtagataaaat |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828677 |
aaccatgttcatcaaataccgtcctaatatattaaatagtcacaagataatatgtttagttaaggagaaacttaaattattttaatgaagtagataaaat |
44828776 |
T |
|
| Q |
615 |
gatgcacaataagtagaannnnnnnggaggtccagcaaaacatgtattacatatgaattaaatttgaaatttaagaaatttacatctttaactctactga |
714 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
44828777 |
gatgcacaataagtagaatttttttggaggtccagcaaaacatgtattacatatcaattaaatttgaaatttaag-aatttacatctttaattctactga |
44828875 |
T |
|
| Q |
715 |
taaattaaatagaacttctaaatgtaagtataataacatgtacattttgatttacctaataaatcggtcttcaccctgagaaaatttacgttcaacttcc |
814 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828876 |
taaattaaatagaacttctaaatgtaagtataataacatgtacattttgatttacctaataaatcggtcttcaccctgagaaaatttacgttcaacttcc |
44828975 |
T |
|
| Q |
815 |
ttgtcctcgtttgactcttcatcactatcactgcatactaatgtttcaccttcctgatgat |
875 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44828976 |
ttgtcctcgtttgactcttcatcactatcactgcatactaatgtttcaccttcctgatgat |
44829036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 8370640 - 8370763
Alignment:
| Q |
199 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
298 |
Q |
| |
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|||| ||||||||||||||| || | ||||| |||| | || |||||| | ||||||| || ||||||||||||||||||||||| ||| ||||||| |
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| T |
8370640 |
cacttaagcttttgttcaaatatatctcagtttgaggtccattttctccaaaatcttcagaatgttggtccttttccttgatattttgataatgctcctg |
8370739 |
T |
|
| Q |
299 |
catattttgattgagaacatttgt |
322 |
Q |
| |
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|||||||||||||| || |||||| |
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| T |
8370740 |
catattttgattgaaaatatttgt |
8370763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 8372042 - 8372165
Alignment:
| Q |
199 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
298 |
Q |
| |
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|||||||||||||||||||| || | ||||| |||||| || |||||| | ||||||| || ||| || |||||| | |||||| ||| |||||||| |
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| T |
8372042 |
cactcaagcttttgttcaaacatatctcagtttgagatccattttctccaaaatcttcagaatgttgatctttttccctaatatttcgataacgctcctg |
8372141 |
T |
|
| Q |
299 |
catattttgattgagaacatttgt |
322 |
Q |
| |
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|||||||||||||| || |||||| |
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| T |
8372142 |
catattttgattgaaaatatttgt |
8372165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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