View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13963_low_14 (Length: 236)

Name: NF13963_low_14
Description: NF13963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13963_low_14
NF13963_low_14
[»] chr8 (22 HSPs)
chr8 (1-223)||(40902451-40902673)
chr8 (110-223)||(30149497-30149602)
chr8 (1-55)||(20760718-20760772)
chr8 (1-55)||(10989299-10989353)
chr8 (1-55)||(15011087-15011141)
chr8 (1-57)||(5720925-5720981)
chr8 (3-55)||(8559573-8559625)
chr8 (3-55)||(8559738-8559790)
chr8 (1-56)||(43599302-43599357)
chr8 (1-55)||(33435875-33435929)
chr8 (1-54)||(42228764-42228817)
chr8 (1-53)||(35561660-35561712)
chr8 (3-55)||(45122303-45122355)
chr8 (1-55)||(4196008-4196063)
chr8 (5-55)||(15010883-15010934)
chr8 (1-55)||(10989092-10989146)
chr8 (1-55)||(43901075-43901129)
chr8 (3-55)||(8559859-8559910)
chr8 (7-55)||(15857171-15857219)
chr8 (1-55)||(30176522-30176576)
chr8 (22-55)||(43599510-43599543)
chr8 (11-55)||(18313776-18313820)
[»] chr3 (41 HSPs)
chr3 (1-55)||(5440569-5440623)
chr3 (1-55)||(4191180-4191234)
chr3 (1-55)||(50692315-50692369)
chr3 (1-58)||(39078829-39078886)
chr3 (1-56)||(22339732-22339787)
chr3 (1-55)||(50692518-50692572)
chr3 (1-55)||(54591523-54591577)
chr3 (3-55)||(9264146-9264198)
chr3 (3-55)||(9264353-9264405)
chr3 (3-55)||(9264560-9264612)
chr3 (3-55)||(37058831-37058883)
chr3 (1-53)||(49477528-49477580)
chr3 (3-57)||(22407708-22407762)
chr3 (1-47)||(26366731-26366777)
chr3 (1-55)||(54495523-54495577)
chr3 (3-56)||(51338501-51338554)
chr3 (3-56)||(53640232-53640285)
chr3 (1-55)||(21832749-21832803)
chr3 (1-55)||(37223567-37223621)
chr3 (1-55)||(40230492-40230546)
chr3 (10-55)||(29369793-29369838)
chr3 (3-56)||(47702484-47702537)
chr3 (7-56)||(48308521-48308570)
chr3 (3-55)||(51642695-51642748)
chr3 (3-55)||(1353399-1353451)
chr3 (3-55)||(25627981-25628033)
chr3 (3-55)||(33798859-33798911)
chr3 (3-55)||(42258902-42258954)
chr3 (1-48)||(34992576-34992623)
chr3 (1-48)||(34992868-34992915)
chr3 (1-48)||(39956732-39956779)
chr3 (1-56)||(40926445-40926500)
chr3 (1-55)||(4029702-4029756)
chr3 (5-55)||(10758830-10758880)
chr3 (1-55)||(21833516-21833570)
chr3 (1-55)||(39956525-39956579)
chr3 (1-55)||(40230697-40230751)
chr3 (2-55)||(44145453-44145506)
chr3 (3-55)||(22407501-22407553)
chr3 (3-55)||(51642488-51642540)
chr3 (3-55)||(53640025-53640077)
[»] chr5 (36 HSPs)
chr5 (1-57)||(43490521-43490577)
chr5 (1-55)||(48162-48216)
chr5 (1-55)||(28358093-28358147)
chr5 (1-55)||(34457295-34457349)
chr5 (1-55)||(2908620-2908674)
chr5 (1-55)||(5127971-5128025)
chr5 (1-55)||(38376723-38376777)
chr5 (1-55)||(43490314-43490368)
chr5 (1-55)||(3762898-3762952)
chr5 (1-55)||(11632423-11632477)
chr5 (1-55)||(18914219-18914273)
chr5 (1-55)||(18914426-18914480)
chr5 (1-55)||(39268010-39268064)
chr5 (3-55)||(24125054-24125106)
chr5 (1-49)||(35527199-35527247)
chr5 (1-56)||(15510713-15510768)
chr5 (1-48)||(34457095-34457142)
chr5 (1-55)||(13413576-13413630)
chr5 (1-55)||(18107536-18107590)
chr5 (1-55)||(29008064-29008118)
chr5 (1-47)||(35527046-35527092)
chr5 (1-55)||(39268218-39268272)
chr5 (3-56)||(15286844-15286897)
chr5 (18-55)||(28156028-28156065)
chr5 (1-50)||(30870943-30870992)
chr5 (1-53)||(32501205-32501257)
chr5 (3-55)||(37781904-37781956)
chr5 (1-55)||(35527332-35527387)
chr5 (1-55)||(2908827-2908881)
chr5 (21-55)||(17130062-17130096)
chr5 (1-55)||(28156231-28156284)
chr5 (3-49)||(40169101-40169147)
chr5 (22-55)||(13413782-13413815)
chr5 (6-55)||(15287045-15287094)
chr5 (3-55)||(21019930-21019982)
chr5 (3-55)||(37656792-37656844)
[»] chr1 (23 HSPs)
chr1 (1-57)||(29273283-29273339)
chr1 (1-55)||(39649142-39649196)
chr1 (7-56)||(9380891-9380940)
chr1 (3-56)||(52846909-52846962)
chr1 (3-55)||(15392017-15392069)
chr1 (4-55)||(12314570-12314621)
chr1 (1-47)||(43361610-43361656)
chr1 (1-47)||(43361815-43361861)
chr1 (3-56)||(48558381-48558434)
chr1 (3-55)||(29265910-29265962)
chr1 (5-56)||(39648826-39648877)
chr1 (1-55)||(11590412-11590466)
chr1 (5-55)||(24382213-24382263)
chr1 (1-55)||(39648936-39648989)
chr1 (3-55)||(2997116-2997168)
chr1 (1-56)||(25799111-25799166)
chr1 (1-56)||(38871213-38871268)
chr1 (1-55)||(5222686-5222740)
chr1 (1-55)||(13959394-13959448)
chr1 (1-55)||(45395544-45395598)
chr1 (22-55)||(52921546-52921579)
chr1 (3-55)||(2997321-2997373)
chr1 (3-35)||(9381111-9381143)
[»] chr6 (18 HSPs)
chr6 (1-56)||(16877068-16877123)
chr6 (1-55)||(15101169-15101223)
chr6 (3-55)||(6623485-6623537)
chr6 (5-55)||(16590176-16590226)
chr6 (5-55)||(16605154-16605204)
chr6 (3-55)||(11313442-11313494)
chr6 (1-55)||(19712462-19712516)
chr6 (1-55)||(26394543-26394597)
chr6 (1-57)||(11316833-11316889)
chr6 (7-55)||(18494338-18494386)
chr6 (3-55)||(24558575-24558627)
chr6 (1-57)||(28149783-28149839)
chr6 (1-56)||(25998808-25998863)
chr6 (1-56)||(26098333-26098388)
chr6 (1-52)||(30539415-30539466)
chr6 (22-55)||(11317040-11317073)
chr6 (1-58)||(19291976-19292033)
chr6 (1-49)||(16876888-16876936)
[»] chr7 (24 HSPs)
chr7 (1-55)||(9378992-9379046)
chr7 (1-55)||(39808655-39808709)
chr7 (6-55)||(6214298-6214347)
chr7 (1-57)||(35866697-35866753)
chr7 (1-55)||(6782818-6782872)
chr7 (1-55)||(6783030-6783084)
chr7 (1-55)||(9378785-9378839)
chr7 (1-55)||(16565090-16565144)
chr7 (1-55)||(16600518-16600572)
chr7 (1-55)||(29252568-29252622)
chr7 (1-56)||(16564885-16564940)
chr7 (1-56)||(16600722-16600777)
chr7 (1-55)||(4258058-4258112)
chr7 (1-55)||(4258262-4258316)
chr7 (1-55)||(23390582-23390636)
chr7 (1-55)||(31357733-31357787)
chr7 (1-55)||(48113989-48114043)
chr7 (3-55)||(23396601-23396653)
chr7 (1-55)||(10903335-10903389)
chr7 (1-55)||(10903542-10903596)
chr7 (1-55)||(33833942-33833996)
chr7 (1-55)||(33855683-33855737)
chr7 (22-55)||(6751788-6751821)
chr7 (7-55)||(2179646-2179694)
[»] chr4 (29 HSPs)
chr4 (1-55)||(12016741-12016795)
chr4 (1-55)||(12016949-12017003)
chr4 (3-55)||(21498523-21498575)
chr4 (3-55)||(54210369-54210421)
chr4 (1-55)||(25753663-25753717)
chr4 (1-55)||(43943665-43943719)
chr4 (1-58)||(5488356-5488413)
chr4 (1-55)||(28497272-28497326)
chr4 (3-55)||(27634386-27634438)
chr4 (3-55)||(39110899-39110951)
chr4 (1-55)||(1923049-1923103)
chr4 (1-55)||(29113441-29113495)
chr4 (1-55)||(49380938-49380992)
chr4 (1-50)||(50307273-50307322)
chr4 (3-55)||(53559365-53559417)
chr4 (1-55)||(8560029-8560083)
chr4 (1-55)||(26806503-26806557)
chr4 (1-55)||(28245985-28246039)
chr4 (22-56)||(33629595-33629629)
chr4 (1-55)||(33629651-33629705)
chr4 (1-55)||(47491904-47491958)
chr4 (22-55)||(11786857-11786890)
chr4 (22-55)||(11799024-11799057)
chr4 (22-55)||(17077019-17077052)
chr4 (22-55)||(17077223-17077256)
chr4 (3-56)||(23350790-23350843)
chr4 (22-55)||(28245783-28245816)
chr4 (10-55)||(28395170-28395215)
chr4 (22-55)||(33629855-33629888)
[»] chr2 (33 HSPs)
chr2 (1-55)||(19859917-19859971)
chr2 (1-55)||(19860029-19860083)
chr2 (1-55)||(20999047-20999101)
chr2 (3-55)||(16006969-16007021)
chr2 (1-55)||(883659-883713)
chr2 (1-59)||(6986474-6986532)
chr2 (1-55)||(12419830-12419884)
chr2 (1-55)||(12431890-12431944)
chr2 (1-55)||(17727396-17727450)
chr2 (5-55)||(34775349-34775399)
chr2 (1-58)||(13839317-13839374)
chr2 (1-55)||(29695397-29695451)
chr2 (1-50)||(883847-883896)
chr2 (3-55)||(884049-884101)
chr2 (3-55)||(10570927-10570979)
chr2 (3-55)||(25621345-25621397)
chr2 (3-55)||(29684003-29684055)
chr2 (3-55)||(33985829-33985881)
chr2 (3-55)||(33986035-33986087)
chr2 (4-55)||(40009966-40010017)
chr2 (1-55)||(31761124-31761178)
chr2 (1-55)||(39386662-39386716)
chr2 (3-55)||(18607313-18607365)
chr2 (3-55)||(21734408-21734460)
chr2 (3-55)||(29684211-29684263)
chr2 (1-48)||(29101749-29101796)
chr2 (1-55)||(3435544-3435598)
chr2 (1-55)||(8044604-8044658)
chr2 (1-55)||(12432097-12432151)
chr2 (1-55)||(27545174-27545228)
chr2 (1-55)||(32667175-32667229)
chr2 (1-53)||(1218938-1218990)
chr2 (3-55)||(15518659-15518711)
[»] scaffold0989 (1 HSPs)
scaffold0989 (1-54)||(3005-3058)
[»] scaffold0434 (2 HSPs)
scaffold0434 (1-55)||(13505-13559)
scaffold0434 (1-57)||(13296-13352)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-55)||(21321-21376)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-56)||(76842-76898)
[»] scaffold0060 (1 HSPs)
scaffold0060 (3-54)||(59518-59566)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40902451 - 40902673
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatagatgctgacacaaactggttcgcgaaagttgttggaaaagagatc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40902451 aaactcttctcaagagtcttgtctatccgatgtggaacttgggtttttcccaatagatgctgacacaaactggttcgcgaaagttgttggaaaagagatc 40902550  T
Q  101 ggaaacggtgaaaacacgttattctagaaggagttatggcaagtggatcagccaatctgtcatcaatttccatacccgttcagtttagcttctgacaagc 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40902551 ggaaacggtgaaaacgcgttattctagaaggagttatggcaagtggatcagccaatctgtcatcaatttccatacccgttcagtttagcttctgacaagc 40902650  T
Q  201 aattcatagtagcacagaaactg 223  Q
    |||||||||||||||||||||||    
T  40902651 aattcatagtagcacagaaactg 40902673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 30149497 - 30149602
Alignment:
Q  110 gaaaacacgttattctagaaggagttatggcaagtggatcagccaatctgtcatcaatttccatacccgttcagtttagcttctgacaagcaattcatag 209  Q
    |||||||| ||||||| ||||||||||||||||| | |||||||||        ||||||||| ||| |||| ||||||||||||||||| |||||| ||    
T  30149497 gaaaacacattattctggaaggagttatggcaagggaatcagccaa--------caatttccaaacctgttctgtttagcttctgacaaggaattcacag 30149588  T
Q  210 tagcacagaaactg 223  Q
    ||||||||||||||    
T  30149589 tagcacagaaactg 30149602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20760718 - 20760772
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  20760718 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 20760772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10989299 - 10989353
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  10989299 aaactcttctcaagagtcttgtctatccgatgtgggacttgggttttttccaata 10989353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15011087 - 15011141
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  15011087 aaactcttctcaagagtcttgtctatccgatgtgggacttgggttttttccaata 15011141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5720925 - 5720981
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaataga 57  Q
    |||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||    
T  5720925 aaactcttctcaagagtcttatctatccgatgtgggacttggatttttcccaataga 5720981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 8559625 - 8559573
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  8559625 actcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 8559573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 8559738 - 8559790
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  8559738 actcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 8559790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43599357 - 43599302
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||    
T  43599357 aaactcttctcaagagtcttatctatccgatgtgggacttgagtttttcccaatag 43599302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33435929 - 33435875
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||    
T  33435929 aaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 33435875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42228817 - 42228764
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaat 54  Q
    |||||||||||||||| |||||||||||||||||| |||| | |||||||||||    
T  42228817 aaactcttctcaagagtcttgtctatccgatgtgggacttagatttttcccaat 42228764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35561712 - 35561660
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaa 53  Q
    |||||||||||||||  ||| |||||||||||||| |||||||||||||||||    
T  35561712 aaactcttctcaagaatcttatctatccgatgtgggacttgggtttttcccaa 35561660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 45122355 - 45122303
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||| ||||||| |||||||||||||||||||    
T  45122355 actcttctcaagagtcttatctatcagatgtgggacttgggtttttcccaata 45122303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4196008 - 4196063
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaactt-gggtttttcccaata 55  Q
    |||||||||||||||| ||||||||||||||||||  ||| |||||||||||||||    
T  4196008 aaactcttctcaagagtcttgtctatccgatgtgggccttggggtttttcccaata 4196063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 15010883 - 15010934
Alignment:
Q  5 tcttctcaagagccttgtctatccgatgtggaactt-gggtttttcccaata 55  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  15010883 tcttctcaagagtcttgtctatccgatgtgggacttggggtttttcccaata 15010934  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10989092 - 10989146
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||| | ||||||| |||||||||||| ||||||    
T  10989092 aaactcttctcaagagtcttgtctacctgatgtgggacttgggttttttccaata 10989146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43901075 - 43901129
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| || ||||||||||||||||    
T  43901075 aaactcttatcaagagtcttatctatccgatgtgggacatgggtttttcccaata 43901129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 8559859 - 8559910
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||  |||||||||||||| |||||||||||||||||||    
T  8559859 actcttctcaagagtcta-tctatccgatgtgggacttgggtttttcccaata 8559910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 15857219 - 15857171
Alignment:
Q  7 ttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||| ||| |||||||||||||| ||||| |||||||||||||    
T  15857219 ttctcaagagtcttatctatccgatgtgggacttgagtttttcccaata 15857171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30176522 - 30176576
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||  ||||||| || ||||||||||||||| ||||| |||||||||||||    
T  30176522 aaactctcatcaagagtctcgtctatccgatgtgggacttgagtttttcccaata 30176576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 43599543 - 43599510
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||||    
T  43599543 tctatccgatgtgggacttgggtttttcccaata 43599510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 18313820 - 18313776
Alignment:
Q  11 caagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||| ||| |||||||||||||| |||||| ||||||||||||    
T  18313820 caagagtcttatctatccgatgtgggacttggatttttcccaata 18313776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5440623 - 5440569
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5440623 aaactcttctcaagagtcttgtctatccgatgtggaacttgggtttttcccaata 5440569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4191180 - 4191234
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  4191180 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 4191234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 50692369 - 50692315
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  50692369 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 50692315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 39078829 - 39078886
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatagat 58  Q
    |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  39078829 aaactcttctcaagagtcttgtctatccgatatgggacttgggtttttcccaatagat 39078886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22339787 - 22339732
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  22339787 aaactcttctcaagagtcttgtctatccgatgtgggacttggatttttcccaatag 22339732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 50692572 - 50692518
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  50692572 aaactcttatcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 50692518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 54591523 - 54591577
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  54591523 aaactcttctcaagagtcttgtctatccgatgtgggacttggatttttcccaata 54591577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 9264146 - 9264198
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  9264146 actcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 9264198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 9264353 - 9264405
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  9264353 actcttctcaagagtcttgtctatccgatgtgggacttggatttttcccaata 9264405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 9264560 - 9264612
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  9264560 actcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 9264612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 37058831 - 37058883
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  37058831 actcttctcaagagtcttgtctatctgatgtgggacttgggtttttcccaata 37058883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49477580 - 49477528
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaa 53  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||||    
T  49477580 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaa 49477528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 22407708 - 22407762
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaataga 57  Q
    ||||||||| |||| |||||||||||||||||| |||||| ||||||||||||||    
T  22407708 actcttctcgagagtcttgtctatccgatgtgggacttggatttttcccaataga 22407762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26366777 - 26366731
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttt 47  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||    
T  26366777 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttt 26366731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 54495577 - 54495523
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||    
T  54495577 aaactcttctcaagagtcttatctatccgatgtgggacttggatttttcccaata 54495523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 51338501 - 51338554
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||    
T  51338501 actcttctcaagagtcttatctatctgatgtgggacttgggtttttcccaatag 51338554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 53640232 - 53640285
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||    
T  53640232 actcttctcaagagtcttatctatctgatgtgggacttgggtttttcccaatag 53640285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21832749 - 21832803
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| ||||| | |||| ||||||    
T  21832749 aaactcttctcaagagtcttgtctatccgatgtgggacttgagatttttccaata 21832803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37223621 - 37223567
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||| ||| ||| |||||||||||||| |||| ||||||||||||||    
T  37223621 aaactcttctcaggagtcttatctatccgatgtgggacttaggtttttcccaata 37223567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40230492 - 40230546
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||  ||||||| ||  ||||||||||||||||||||||||||||||||||    
T  40230492 aaactctcatcaagagtctcatctatccgatgtggaacttgggtttttcccaata 40230546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 29369838 - 29369793
Alignment:
Q  10 tcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||||    
T  29369838 tcaagagtcttatctatccgatgtgggacttgggtttttcccaata 29369793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 47702484 - 47702537
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||| ||  |||||||||||||| ||||| ||||||||||||||    
T  47702484 actcttctcaagagtctcatctatccgatgtgggacttgtgtttttcccaatag 47702537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 48308521 - 48308570
Alignment:
Q  7 ttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||| ||||||||| |||||||| |||||| |||||||||||||    
T  48308521 ttctcaagagtcttgtctattcgatgtgggacttggatttttcccaatag 48308570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 51642695 - 51642748
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaac-ttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| || |||||||||||||||||    
T  51642695 actcttctcaagagtcttatctatccgatgtgggactttgggtttttcccaata 51642748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 1353451 - 1353399
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||  ||||||||| |||||||| |||||||||||||| ||||    
T  1353451 actcttctcaagaatcttgtctatgcgatgtgggacttgggtttttcctaata 1353399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 25627981 - 25628033
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||  ||| |||||||||||||| |||||||||||||||||||    
T  25627981 actcttctgaagaatcttatctatccgatgtgggacttgggtttttcccaata 25628033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 33798859 - 33798911
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||| |||||||||||||||||| | |||||||||| ||||||    
T  33798859 actcttcttaagagtcttgtctatccgatgtgggatttgggttttttccaata 33798911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 42258954 - 42258902
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||  ||| |||||||||||||| |||||| ||||||||||||    
T  42258954 actcttctcaagaatcttatctatccgatgtgggacttggatttttcccaata 42258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34992623 - 34992576
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggttttt 48  Q
    |||||||||||||||| ||| |||||| ||||||| ||||||||||||    
T  34992623 aaactcttctcaagagtcttatctatctgatgtgggacttgggttttt 34992576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34992915 - 34992868
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggttttt 48  Q
    |||||||||||||||| ||| |||||| ||||||| ||||||||||||    
T  34992915 aaactcttctcaagagtcttatctatctgatgtgggacttgggttttt 34992868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39956732 - 39956779
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggttttt 48  Q
    |||||||||||||||| |||||||||| ||||||| ||||| ||||||    
T  39956732 aaactcttctcaagagtcttgtctatctgatgtgggacttgagttttt 39956779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40926500 - 40926445
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||| ||||||| ||| |||||||||||||| || || ||||||||||||||    
T  40926500 aaactcttatcaagagtcttatctatccgatgtgggacatgtgtttttcccaatag 40926445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4029702 - 4029756
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||  || |||||||||    
T  4029702 aaactcttctcaagagtcttatctatccgatgtgggacttgcattattcccaata 4029756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 10758830 - 10758880
Alignment:
Q  5 tcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||| ||| |||||||||||||| ||||| |||||| ||||||    
T  10758830 tcttctcaagagtcttatctatccgatgtgggacttgagttttttccaata 10758880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21833570 - 21833516
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||| |||| ||||| ||||| |||||| ||||||||||||| |||||    
T  21833570 aaactcttctccagagtcttgtttatccaatgtgggacttgggtttttctcaata 21833516  T

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Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39956525 - 39956579
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||| ||||  |||||||||| ||||||| |||||| ||||||||||||    
T  39956525 aaactcttcttaagattcttgtctatctgatgtgggacttggatttttcccaata 39956579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40230697 - 40230751
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||  ||||||| ||  |||||||||||||||||||||||||||| |||||    
T  40230697 aaactctcatcaagagtctcatctatccgatgtggaacttgggtttttctcaata 40230751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 44145453 - 44145506
Alignment:
Q  2 aactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||| ||||||| | | |||||||||||||| | |||||||||||||||||    
T  44145453 aactcttatcaagagtcatatctatccgatgtgggatttgggtttttcccaata 44145506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 22407501 - 22407553
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||| ||||  ||||||||||||||||| |||| | ||||||||||||    
T  22407501 actcttctcgagagttttgtctatccgatgtgggacttagatttttcccaata 22407553  T

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Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 51642488 - 51642540
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| ||||||| | |||| ||||||||||||| |||||    
T  51642488 actcttctcaagagtcttatctatccaacgtgggacttgggtttttcgcaata 51642540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 53640025 - 53640077
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||| ||||||| ||| |||||||||| ||| |||||| ||||||||||||    
T  53640025 actcttgtcaagagtcttatctatccgatatgggacttggatttttcccaata 53640077  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43490521 - 43490577
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaataga 57  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  43490521 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaataga 43490577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48162 - 48216
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  48162 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 48216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28358093 - 28358147
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  28358093 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 28358147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34457349 - 34457295
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  34457349 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 34457295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2908620 - 2908674
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||    
T  2908620 aaactattctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 2908674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5127971 - 5128025
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  5127971 aaactcttctcaagagccttgtctatccgatgtagaacttggattttttccaata 5128025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38376777 - 38376723
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  38376777 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 38376723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43490314 - 43490368
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  43490314 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 43490368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3762952 - 3762898
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| || ||||||||||||||||    
T  3762952 aaactcttctcaagagtcttatctatccgatgtgggacatgggtttttcccaata 3762898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11632477 - 11632423
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||    
T  11632477 aaactcttctcaagagtcttgtctatccgatgtgggacttggattttttccaata 11632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18914219 - 18914273
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  18914219 aaacttttctcaagagtcttgactatccgatgtgggacttgggtttttcccaata 18914273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18914426 - 18914480
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  18914426 aaacttttctcaagagtcttgactatccgatgtgggacttgggtttttcccaata 18914480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39268064 - 39268010
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||    
T  39268064 aaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 39268010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 24125106 - 24125054
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||||| |||||||||| | |||||||||||||||||||    
T  24125106 actcttctcaagagtcttgtttatccgatgtaggacttgggtttttcccaata 24125054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35527199 - 35527247
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttc 49  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  35527199 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttttc 35527247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15510713 - 15510768
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||||| | |||||||||||||||||||| |||||| ||| |||||    
T  15510713 aaactcttctcaagagtcatgtctatccgatgtggaactcgggtttctcctaatag 15510768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34457142 - 34457095
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggttttt 48  Q
    |||||||||||||||| |||||||||||||| ||| ||||||||||||    
T  34457142 aaactcttctcaagagtcttgtctatccgatatgggacttgggttttt 34457095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13413630 - 13413576
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||||    
T  13413630 aaactcttctcaagagtcttatctatttgatgtgggacttgggtttttcccaata 13413576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18107536 - 18107590
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||  ||||||| ||| |||||||||||||| |||||||||||||||||||    
T  18107536 aaactctcatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 18107590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29008118 - 29008064
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||| | ||||||| ||| ||||||||||||||||| ||||||||||||||||    
T  29008118 aaactcctatcaagagtcttatctatccgatgtggaacatgggtttttcccaata 29008064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35527046 - 35527092
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttt 47  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||    
T  35527046 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttt 35527092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39268272 - 39268218
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| |||||||  || |||||||||||||| |||||||||||||||||||    
T  39268272 aaactcttatcaagagttttatctatccgatgtgggacttgggtttttcccaata 39268218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 15286897 - 15286844
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||| ||| |||||||||||||  |||||| |||||||||||||    
T  15286897 actcttctcaagagtcttatctatccgatgtgagacttggatttttcccaatag 15286844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 28156065 - 28156028
Alignment:
Q  18 cttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  28156065 cttgtctatccgatgtgggacttgggtttttcccaata 28156028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30870943 - 30870992
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcc 50  Q
    |||||||||||||||  ||| |||||||||||||||| ||||||||||||    
T  30870943 aaactcttctcaagaatcttatctatccgatgtggaatttgggtttttcc 30870992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 32501257 - 32501205
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaa 53  Q
    |||||||| ||||||| ||| |||||||||||||| |||||| ||||||||||    
T  32501257 aaactcttatcaagagtcttatctatccgatgtgggacttggatttttcccaa 32501205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 37781904 - 37781956
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||  ||||| |||||||||||||    
T  37781904 actcttctcaagagtcttatctatccgatgtgagacttgagtttttcccaata 37781956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35527332 - 35527387
Alignment:
Q  1 aaactcttctc-aagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||| ||||| |||  ||||||||||||| |||||||||||||||||||    
T  35527332 aaactcttctctaagagtcttagctatccgatgtgggacttgggtttttcccaata 35527387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2908827 - 2908881
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||| ||||||| || |||||||||| ||||||| |||||| ||||||||||||    
T  2908827 aaactattctcaaaagtcttgtctatctgatgtgggacttggatttttcccaata 2908881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 17130062 - 17130096
Alignment:
Q  21 gtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  17130062 gtctatccgatgtgggacttgggtttttcccaata 17130096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28156284 - 28156231
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||||||||  ||| | ||||||||||| |||||||||||||||||||    
T  28156284 aaactcttctcaagagttttgcc-atccgatgtgggacttgggtttttcccaata 28156231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 40169101 - 40169147
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttc 49  Q
    |||||||||||||| ||| |||||| ||||||| |||||||||||||    
T  40169101 actcttctcaagagtcttatctatctgatgtgggacttgggtttttc 40169147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 13413815 - 13413782
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||||    
T  13413815 tctatccgatgtgggacttgggtttttcccaata 13413782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 15287094 - 15287045
Alignment:
Q  6 cttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||| ||| |||||||||| | | |||||||||||||||||||    
T  15287094 cttctcaagagtcttatctatccgatataggacttgggtttttcccaata 15287045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 21019930 - 21019982
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||| ||||||| ||| | ||||||||||||||| || |||||||||||||    
T  21019930 actcttatcaagagtcttatatatccgatgtggaacatgagtttttcccaata 21019982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 37656792 - 37656844
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||  ||||| |||||| ||||||    
T  37656792 actcttctcaagagtcttatctatccgatgtgagacttgagttttttccaata 37656844  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29273283 - 29273339
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaataga 57  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  29273283 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaataga 29273339  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39649142 - 39649196
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  39649142 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 39649196  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 9380940 - 9380891
Alignment:
Q  7 ttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  9380940 ttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaatag 9380891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 52846909 - 52846962
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  52846909 actcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaatag 52846962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 15392069 - 15392017
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  15392069 actcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 15392017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 12314621 - 12314570
Alignment:
Q  4 ctcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  12314621 ctcttctcaagagtcttgtctatccgatgtgggacttggatttttcccaata 12314570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43361610 - 43361656
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttt 47  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||    
T  43361610 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttt 43361656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43361815 - 43361861
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttt 47  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||    
T  43361815 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttt 43361861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 48558381 - 48558434
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||    
T  48558381 actcttctcaagagtcttatctatccgatatgggacttgggtttttcccaatag 48558434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29265962 - 29265910
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| || ||||||||||| |||||||||||||||||||    
T  29265962 actcttctcaagagtcttatccatccgatgtgggacttgggtttttcccaata 29265910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 39648877 - 39648826
Alignment:
Q  5 tcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||| ||| |||||||||||||| ||||||| ||||||||||||    
T  39648877 tcttctcaagagtcttatctatccgatgtgggacttgggattttcccaatag 39648826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11590466 - 11590412
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| ||| |||||| ||| ||||    
T  11590466 aaactcttctcaagagtcttgtctatccgatgtgggactcgggtttctcctaata 11590412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 24382213 - 24382263
Alignment:
Q  5 tcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||| ||| |||||||||||||| ||||||| |||||||||||    
T  24382213 tcttctcaagagtcttatctatccgatgtgggacttgggattttcccaata 24382263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39648936 - 39648989
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||    
T  39648936 aaactcttctcaagagtcttatctatc-gatgtgggacttgggtttttcccaata 39648989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 2997116 - 2997168
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||||||  || |||||||||||||| |||| ||||||||||||||    
T  2997116 actcttctcaagagttttatctatccgatgtgggacttaggtttttcccaata 2997168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25799166 - 25799111
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    ||||||||||||||||  || |||||| ||||||| || |||||||||||||||||    
T  25799166 aaactcttctcaagagttttatctatctgatgtgggacatgggtttttcccaatag 25799111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38871213 - 38871268
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    ||||| || ||||||| ||| |||||| ||||||| ||||||||||||||||||||    
T  38871213 aaacttttatcaagagtcttatctatctgatgtgggacttgggtttttcccaatag 38871268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5222740 - 5222686
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||| ||||||| |||| ||||||||||||||    
T  5222740 aaactcttatcaagagtcttatctatcagatgtgggacttaggtttttcccaata 5222686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13959448 - 13959394
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||  ||||| ||| |||||||||    
T  13959448 aaactcttctcaagagtcttatctatccgatgtgagacttgcgttattcccaata 13959394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 45395598 - 45395544
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||| ||| ||| |||||||||||||||||||    
T  45395598 aaactcttatcaagagtcttatctatctgatatgggacttgggtttttcccaata 45395544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 52921546 - 52921579
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||||    
T  52921546 tctatccgatgtgggacttgggtttttcccaata 52921579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 2997321 - 2997373
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| | ||| |||||||| ||||    
T  2997321 actcttctcaagagtcttatctatccgatgtgggatttgagtttttcctaata 2997373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 9381143 - 9381111
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtgg 35  Q
    |||||||||||||| ||||||||||||||||||    
T  9381143 actcttctcaagagtcttgtctatccgatgtgg 9381111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16877068 - 16877123
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  16877068 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaatag 16877123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15101169 - 15101223
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  15101169 aaactcttctcaagagtcttgtctatccgatgtgggacttggatttttcccaata 15101223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 6623485 - 6623537
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  6623485 actcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 6623537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 16590226 - 16590176
Alignment:
Q  5 tcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  16590226 tcttcccaagagtcttgtctatccgatgtgggacttgggtttttcccaata 16590176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 16605154 - 16605204
Alignment:
Q  5 tcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  16605154 tcttcccaagagtcttgtctatccgatgtgggacttgggtttttcccaata 16605204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 11313442 - 11313494
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| | |||||||||||||||||    
T  11313442 actcttctcaagagtcttatctatccgatgtgggatttgggtttttcccaata 11313494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19712462 - 19712516
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||| |||||||||| ||| ||||||||||||||||| ||| ||||||||||||    
T  19712462 aaactattctcaagagtcttatctatccgatgtggaacatggatttttcccaata 19712516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26394597 - 26394543
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| ||||||||||||||||| || |||||||||||||    
T  26394597 aaactcttatcaagagtcttatctatccgatgtggaacatgagtttttcccaata 26394543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11316889 - 11316833
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaataga 57  Q
    |||||||  ||||||| ||  |||||||||||||||||||| |||||||||||||||    
T  11316889 aaactctcatcaagagtctcatctatccgatgtggaacttgagtttttcccaataga 11316833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 18494338 - 18494386
Alignment:
Q  7 ttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||| |||||||||| ||||||| | |||||||||||||||||    
T  18494338 ttctcaagagtcttgtctatctgatgtgggatttgggtttttcccaata 18494386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 24558627 - 24558575
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||    
T  24558627 actcttctcaagagtcttatctatctgatgtgggacttggatttttcccaata 24558575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 28149839 - 28149783
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaataga 57  Q
    |||||||| |||||||  || |||||||||||||| || ||||||||||||||||||    
T  28149839 aaactcttatcaagagttttatctatccgatgtgggacatgggtttttcccaataga 28149783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25998863 - 25998808
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    ||||| || ||| ||| ||| |||||||||||||| ||||||||||||||||||||    
T  25998863 aaactattatcatgagtcttatctatccgatgtgggacttgggtttttcccaatag 25998808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26098388 - 26098333
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    ||||| || ||| ||| ||| |||||||||||||| ||||||||||||||||||||    
T  26098388 aaactattatcatgagtcttatctatccgatgtgggacttgggtttttcccaatag 26098333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30539466 - 30539415
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttccca 52  Q
    |||||||| |||| || ||| |||||||||||||| ||||||||||||||||    
T  30539466 aaactcttatcaaaagtcttatctatccgatgtgggacttgggtttttccca 30539415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 11317073 - 11317040
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||||    
T  11317073 tctatccgatgtgggacttgggtttttcccaata 11317040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19291976 - 19292033
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatagat 58  Q
    |||||||| ||||||| ||| |||||||||||||| |||| ||||||| | |||||||    
T  19291976 aaactcttatcaagagtcttatctatccgatgtgggactttggtttttgcaaatagat 19292033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16876888 - 16876936
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttc 49  Q
    ||||| |||||||||| ||||||||||| |||||| |||||| ||||||    
T  16876888 aaactattctcaagagtcttgtctatcctatgtgggacttggatttttc 16876936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9379046 - 9378992
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  9379046 aaactcttctcaagagtcttatctatccgatgtggaacttgggtttttcccaata 9378992  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39808655 - 39808709
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  39808655 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 39808709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 6214298 - 6214347
Alignment:
Q  6 cttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  6214298 cttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 6214347  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35866697 - 35866753
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaataga 57  Q
    |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  35866697 aaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaataga 35866753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6782872 - 6782818
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||  |||||||||||||||||||    
T  6782872 aaactcttctcaagagtcttatctatccgatgtgagacttgggtttttcccaata 6782818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6783084 - 6783030
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||  |||||||||||||||||||    
T  6783084 aaactcttctcaagagtcttatctatccgatgtgagacttgggtttttcccaata 6783030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9378839 - 9378785
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||    
T  9378839 aaactcttctcaagagtcttatctattcgatgtgggacttgggtttttcccaata 9378785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16565144 - 16565090
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||    
T  16565144 aaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 16565090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16600518 - 16600572
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||    
T  16600518 aaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 16600572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29252622 - 29252568
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||    
T  29252622 aaactcttctcaagagtcttatctatccgacgtgggacttgggtttttcccaata 29252568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16564940 - 16564885
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||| | ||||| ||| |||||||||||||| ||||||||||||||||||||    
T  16564940 aaactcttattaagagtcttatctatccgatgtgggacttgggtttttcccaatag 16564885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16600722 - 16600777
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||| | ||||| ||| |||||||||||||| ||||||||||||||||||||    
T  16600722 aaactcttattaagagtcttatctatccgatgtgggacttgggtttttcccaatag 16600777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4258058 - 4258112
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||  |||||||||||||||||||    
T  4258058 aaactcttatcaagagtcttatctatccgatgtgagacttgggtttttcccaata 4258112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4258262 - 4258316
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| ||||| |||||||||||||    
T  4258262 aaactcttatcaagagtcttatctatccgatgtgggacttgagtttttcccaata 4258316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23390636 - 23390582
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| || ||||||||||||||||    
T  23390636 aaactcttatcaagagtcttatctatccgatgtgggacatgggtttttcccaata 23390582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31357733 - 31357787
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| || ||||||||||||||||    
T  31357733 aaactcttatcaagagtcttatctatccgatgtgggacatgggtttttcccaata 31357787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48114043 - 48113989
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| ||||||||| |||||||||    
T  48114043 aaactcttatcaagagtcttatctatccgatgtgggacttgggttattcccaata 48113989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 23396653 - 23396601
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||| ||||| |||||| ||||||||||||    
T  23396653 actcttctcaagagtcttatctatccgttgtgggacttggatttttcccaata 23396601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10903335 - 10903389
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| || || |||||||||||||    
T  10903335 aaactcttatcaagagtcttatctatccgatgtgggacatgtgtttttcccaata 10903389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10903542 - 10903596
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| || || |||||||||||||    
T  10903542 aaactcttatcaagagtcttatctatccgatgtgggacatgagtttttcccaata 10903596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33833996 - 33833942
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| || ||||||||| ||||||    
T  33833996 aaactcttatcaagagtcttatctatccgatgtgggacatgggttttttccaata 33833942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33855737 - 33855683
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||| || ||| ||| ||| |||||||||||||| |||||||||||||||||||    
T  33855737 aaactattatcatgagtcttatctatccgatgtgggacttgggtttttcccaata 33855683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 6751788 - 6751821
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||||    
T  6751788 tctatccgatgtgggacttgggtttttcccaata 6751821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 2179694 - 2179646
Alignment:
Q  7 ttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||| ||| |||||||||||||| |||||  ||||||||||||    
T  2179694 ttctcaagagtcttatctatccgatgtgggacttgaatttttcccaata 2179646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12016741 - 12016795
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  12016741 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 12016795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12016949 - 12017003
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  12016949 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 12017003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21498575 - 21498523
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  21498575 actcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 21498523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 54210421 - 54210369
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  54210421 actcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 54210369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25753663 - 25753717
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  25753663 aaactcttatcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 25753717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43943719 - 43943665
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  43943719 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 43943665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5488413 - 5488356
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatagat 58  Q
    |||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||||    
T  5488413 aaactcttctcaagagtcttatttatccgatgtgggacttgggtttttcccaatagat 5488356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28497272 - 28497326
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||    
T  28497272 aaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 28497326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 27634386 - 27634438
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| |||| ||||||||||||||    
T  27634386 actcttctcaagagtcttatctatccgatgtgggactttggtttttcccaata 27634438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 39110951 - 39110899
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| ||||| |||||||||||||    
T  39110951 actcttctcaagagtcttatctatccgatgtgggacttgagtttttcccaata 39110899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1923049 - 1923103
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||| ||||||| || ||||||||||||||||    
T  1923049 aaactcttctcaagagtcttatctatctgatgtgggacatgggtttttcccaata 1923103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29113495 - 29113441
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||| ||||||| || ||||||||||||||||    
T  29113495 aaactcttctcaagagtcttatctatctgatgtgggacatgggtttttcccaata 29113441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49380938 - 49380992
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||  |||||| ||||||||||||    
T  49380938 aaactcttctcaagagtcttatctatccgatgtgagacttggatttttcccaata 49380992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 50307322 - 50307273
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcc 50  Q
    |||||||| ||||||| ||| |||||||||||||| ||||||||||||||    
T  50307322 aaactcttgtcaagagtcttatctatccgatgtgggacttgggtttttcc 50307273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 53559365 - 53559417
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||||||  || |||||||||||||| |||||| ||||||||||||    
T  53559365 actcttctcaagagttttatctatccgatgtgggacttggttttttcccaata 53559417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8560029 - 8560083
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| ||||||  |||||||||||    
T  8560029 aaactcttatcaagagtcttatctatccgatgtgggacttggacttttcccaata 8560083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26806557 - 26806503
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| | | |||||||||| ||| |||||||||||||||||||    
T  26806557 aaactcttatcaagagtcctatctatccgatttgggacttgggtttttcccaata 26806503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28246039 - 28245985
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||  ||||||| ||  |||||||||||||| |||||||||||||||||||    
T  28246039 aaactctcatcaagagtctcatctatccgatgtgggacttgggtttttcccaata 28245985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 33629629 - 33629595
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||||||||||| ||||||||||||||||||||    
T  33629629 tctatccgatgtgggacttgggtttttcccaatag 33629595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33629705 - 33629651
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||  ||||||| ||  ||||||| ||||||||||||||||||||||||||    
T  33629705 aaactctcatcaagagtctcatctatccaatgtggaacttgggtttttcccaata 33629651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 47491904 - 47491958
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||| | ||||||| ||| |||||||||||||| || ||||||||||||||||    
T  47491904 aaactcctatcaagagtcttatctatccgatgtgggacatgggtttttcccaata 47491958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 11786857 - 11786890
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||||||||||| ||||||||||||||    
T  11786857 tctatccgatgtggaacttaggtttttcccaata 11786890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 11799024 - 11799057
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||||||||||| ||||||||||||||    
T  11799024 tctatccgatgtggaacttaggtttttcccaata 11799057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 17077019 - 17077052
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||||    
T  17077019 tctatccgatgtgggacttgggtttttcccaata 17077052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 17077223 - 17077256
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||||    
T  17077223 tctatccgatgtgggacttgggtttttcccaata 17077256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 23350843 - 23350790
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatag 56  Q
    |||||| ||||||| ||| | |||||||||||| | ||||||||||||||||||    
T  23350843 actcttatcaagagtcttatttatccgatgtgggatttgggtttttcccaatag 23350790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 28245816 - 28245783
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||||    
T  28245816 tctatccgatgtgggacttgggtttttcccaata 28245783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 28395215 - 28395170
Alignment:
Q  10 tcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||| ||| ||||||| |||||| |||||||||||||||||||    
T  28395215 tcaagagtcttatctatccaatgtgggacttgggtttttcccaata 28395170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 33629888 - 33629855
Alignment:
Q  22 tctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||||    
T  33629888 tctatccgatgtgggacttgggtttttcccaata 33629855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19859971 - 19859917
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  19859971 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 19859917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19860083 - 19860029
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  19860083 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 19860029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20999047 - 20999101
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  20999047 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 20999101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 16007021 - 16006969
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  16007021 actcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 16006969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 883659 - 883713
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  883659 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 883713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6986474 - 6986532
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatagatg 59  Q
    |||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||||    
T  6986474 aaactcttctcaagagtcttatctatccgatgtgggacttggatttttcccaatagatg 6986532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12419884 - 12419830
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  12419884 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 12419830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12431944 - 12431890
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  12431944 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 12431890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 17727450 - 17727396
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  17727450 aaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 17727396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 34775399 - 34775349
Alignment:
Q  5 tcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  34775399 tcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 34775349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13839317 - 13839374
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaatagat 58  Q
    |||||||||||||||| ||||||||||||||||| |||||| |||||||| |||||||    
T  13839317 aaactcttctcaagagtcttgtctatccgatgtgaaacttgagtttttccaaatagat 13839374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29695397 - 29695451
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||  |||||||||||||||||||    
T  29695397 aaactcttctcaagagtcttatctatccgatgtgagacttgggtttttcccaata 29695451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 883896 - 883847
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcc 50  Q
    |||||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  883896 aaactcttctcaagagtcttgtctatccgatatgggacttgggtttttcc 883847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 884101 - 884049
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||  |||||||||||||| |||||||||||||||||||    
T  884101 actcttctcaagagtctcatctatccgatgtgggacttgggtttttcccaata 884049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 10570979 - 10570927
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||| ||||||| |||||||||||||||||||    
T  10570979 actcttctcaagagtcttatctatctgatgtgggacttgggtttttcccaata 10570927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 25621345 - 25621397
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||  |||||||||||||||||||    
T  25621345 actcttctcaagagtcttatctatccgatgtgagacttgggtttttcccaata 25621397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29684055 - 29684003
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| |||||||||| |||| || |||||||||||||||||||    
T  29684055 actcttctcaagagtcttgtctatctgatgcgggacttgggtttttcccaata 29684003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 33985829 - 33985881
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||| ||||||    
T  33985829 actcttctcaagagtcttatctatccgatgtgggacttgggtttttgccaata 33985881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 33986035 - 33986087
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| | |||||||||||||||||    
T  33986035 actcttctcaagagtcttatctatccgatgtgggagttgggtttttcccaata 33986087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 40010017 - 40009966
Alignment:
Q  4 ctcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||  || |||||||||||||| |||||||||||||||||||    
T  40010017 ctcttctcaagagttttatctatccgatgtgggacttgggtttttcccaata 40009966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31761178 - 31761124
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||||| || ||| |||||||||||||| |||| ||||||||||||||    
T  31761178 aaactcttctcaaaagtcttatctatccgatgtgggacttaggtttttcccaata 31761124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39386716 - 39386662
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||||||||||| || ||||||||||||||||    
T  39386716 aaactcttatcaagagtcttatctatccgatgtgggacatgggtttttcccaata 39386662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 18607313 - 18607365
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||| |||||||||||||||||  ||||| |||||||||||||    
T  18607313 actcttcttaagagtcttgtctatccgatgtgagacttgtgtttttcccaata 18607365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21734460 - 21734408
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||| ||| |||||||||||||| |  ||||||||||||||||    
T  21734460 actcttctcaagagtcttatctatccgatgtgggatgtgggtttttcccaata 21734408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29684263 - 29684211
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||    
T  29684263 actcttctcaagagttttgtctaatcgatgcggaacttgggtttttcccaata 29684211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29101796 - 29101749
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggttttt 48  Q
    |||||||||||||| | |||||||||||||||||| ||||| ||||||    
T  29101796 aaactcttctcaagtgtcttgtctatccgatgtgggacttgagttttt 29101749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3435544 - 3435598
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| |||||  ||||| ||||||    
T  3435544 aaactcttctcaagagtcttatctatccgatgtgggacttgaattttttccaata 3435598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8044604 - 8044658
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||| |||| || |||||||||||||||||||    
T  8044604 aaactcttatcaagagtcttatctatctgatgcgggacttgggtttttcccaata 8044658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12432151 - 12432097
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||  ||| |||||||||||||| |||||| ||||| ||||||    
T  12432151 aaactcttctcaagattcttatctatccgatgtgggacttggattttttccaata 12432097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27545174 - 27545228
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| ||| |||||||||||||| || ||| ||||| ||||||    
T  27545174 aaactcttctcaagagtcttatctatccgatgtgggacatggattttttccaata 27545228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32667229 - 32667175
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||| ||||||| ||| |||||| ||||||| |||| ||||||||||||||    
T  32667229 aaactcttatcaagagtcttatctatctgatgtgggacttcggtttttcccaata 32667175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1218938 - 1218990
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaa 53  Q
    ||||||||||||| ||  || |||||||||||||||||||| |||||| ||||    
T  1218938 aaactcttctcaatagttttatctatccgatgtggaacttgagttttttccaa 1218990  T

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Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 15518711 - 15518659
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||| ||||||| ||| |||||||||| |||||| ||| ||||||||||||    
T  15518711 actcttttcaagagtcttatctatccgatttggaacatggatttttcccaata 15518659  T

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Target: scaffold0989 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3005 - 3058
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaat 54  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  3005 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtttttcccaat 3058  T

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Target: scaffold0434 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13559 - 13505
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaata 55  Q
    |||||||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  13559 aaactcttctcaagagtcttgtctatccgatttgggacttgggtttttcccaata 13505  T

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Target: scaffold0434; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13352 - 13296
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaataga 57  Q
    |||||||||||||||| |||||||||||||||||| || || |||||||||||||||    
T  13352 aaactcttctcaagagtcttgtctatccgatgtgggacctgagtttttcccaataga 13296  T

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Target: scaffold0054 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21321 - 21376
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggt-ttttcccaata 55  Q
    |||||||||||||||| |||||||||||||||||| |||||||| |||||||||||    
T  21321 aaactcttctcaagagtcttgtctatccgatgtgggacttgggtattttcccaata 21376  T

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Target: scaffold0029 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 76898 - 76842
Alignment:
Q  1 aaactcttctcaagagccttgtctatccgatgtggaacttgggt-ttttcccaatag 56  Q
    |||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||    
T  76898 aaactcttctcaagagtcttatctatccgatgtgggacttgggttttttcccaatag 76842  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 59566 - 59518
Alignment:
Q  3 actcttctcaagagccttgtctatccgatgtggaacttgggtttttcccaat 54  Q
    ||||||||||||||   | |||||||||||||| ||||||||||||||||||    
T  59566 actcttctcaagag---tatctatccgatgtgggacttgggtttttcccaat 59518  T

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