View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13963_low_15 (Length: 233)
Name: NF13963_low_15
Description: NF13963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13963_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 24518745 - 24518552
Alignment:
| Q |
22 |
acacatcatcccatttaggactcggccaaatttccgtggtctccaaattgattacatgcccccactaaaactatctcctcaagtttaaaatatattttgg |
121 |
Q |
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| T |
24518745 |
acacatcatcccatttaggactcggccaaattttcgtggtctccaaattgattatatgcccccactaaaactacctcctcaagttaaaaatatattttgg |
24518646 |
T |
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| Q |
122 |
gcatatacaacaaatggagccttttttacactccatcttcgactttcagtgccgtacgccctctgttgaagactctagactaaaagttgaagaa |
215 |
Q |
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| T |
24518645 |
gcacatacaacaaatggagctttttttacactccatcttcgactcttagtcccgtatgccctctgttgaagactttagactaaaagttgaagaa |
24518552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 24507974 - 24507892
Alignment:
| Q |
14 |
atttgttcacacatcatcccatttaggactcg-gccaaatttccgtggtctccaaattgattacatgcccccactaaaactat |
95 |
Q |
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| T |
24507974 |
atttgttcacacatcatcccatctagggcttgcgccaaattttcgtggtctccaaattgattgcatgcccccactagaactat |
24507892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 24507786 - 24507680
Alignment:
| Q |
90 |
aactatctcctcaagtttaaaatatattttgggcatatacaacaaatggagccttttttacactccatcttcgactttcagtgccgtacgccctctgttg |
189 |
Q |
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||||| ||| ||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||| || || |||||| | |
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| T |
24507786 |
aactacctcatcaagttaaaaatatatcttggg----tacaacaagtggagccttttttacactccatcttcgactctcagtctcgcacaccctctccta |
24507691 |
T |
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| Q |
190 |
aagactctaga |
200 |
Q |
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| T |
24507690 |
aagactctaga |
24507680 |
T |
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