View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13963_low_16 (Length: 229)
Name: NF13963_low_16
Description: NF13963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13963_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 49202274 - 49202083
Alignment:
| Q |
14 |
tgagatgaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaa |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49202274 |
tgagaagaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgcttgcaagcaagaagccgaagcagagctatacgcaaagaaaaaa |
49202175 |
T |
|
| Q |
114 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49202174 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactacacagctgtaag |
49202083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 49207229 - 49207038
Alignment:
| Q |
14 |
tgagatgaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaa |
113 |
Q |
| |
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||||| |||||||||||||||||| || ||||| | |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
49207229 |
tgagaagaaggcagaggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaa |
49207130 |
T |
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| Q |
114 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
205 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49207129 |
gaggcagaggggattatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
49207038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 49211803 - 49211612
Alignment:
| Q |
14 |
tgagatgaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaa |
113 |
Q |
| |
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||||| ||||||||||||||||||||| ||||| | |||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
49211803 |
tgagaagaaggcagaggcagaagcacaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctgtacgcaaagaaaaaa |
49211704 |
T |
|
| Q |
114 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |
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| T |
49211703 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactatacagcagtaag |
49211612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 49187294 - 49187103
Alignment:
| Q |
14 |
tgagatgaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaa |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||| ||||||||||| || ||||||||||| |
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| T |
49187294 |
tgagaagaaggcagaggcagaagcacagaaagcgtcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaag |
49187195 |
T |
|
| Q |
114 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
205 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49187194 |
gaggcagagggaattgtgacacttggacaagctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctgtaag |
49187103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 49190985 - 49190794
Alignment:
| Q |
14 |
tgagatgaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaa |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||| |
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| T |
49190985 |
tgagaagaaggcagaggcagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagcagctgaagcagagctatatgcaaagaaaaag |
49190886 |
T |
|
| Q |
114 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
205 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
49190885 |
gaggcagagggaattgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaag |
49190794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 32593300 - 32593491
Alignment:
| Q |
14 |
tgagatgaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaa |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
32593300 |
tgagaagaaggcagaggcagaagcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaa |
32593399 |
T |
|
| Q |
114 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
32593400 |
gaggcagaagggattgtgacacttgggaatgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaag |
32593491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 31527101 - 31526910
Alignment:
| Q |
14 |
tgagatgaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaa |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||| |
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| T |
31527101 |
tgagaagaaggcagaggcagaagcacagaaagcattgtcagatgcaacattttatgcgcgcaagcaagcagccgaagcggagctatatgcaaagaaaaaa |
31527002 |
T |
|
| Q |
114 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
31527001 |
gaggcagaggggattgtgacacttgggaatgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaag |
31526910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 51823990 - 51823800
Alignment:
| Q |
15 |
gagatgaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaag |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||| |
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| T |
51823990 |
gagaagaaggcagaggcagaagcacagaaagcattggcagatgcaacattttatgcgtgcaagcaagcagctgaagcagatctatacgcaaagaaaaaag |
51823891 |
T |
|
| Q |
115 |
aggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
51823890 |
aggcagaggggattgtgacacttggaaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaag |
51823800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 37030440 - 37030252
Alignment:
| Q |
14 |
tgagatgaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaa |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| |||| ||| ||||||||||| || ||||||||||| |
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|
| T |
37030440 |
tgagaagaaggcagaggcagaagcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaag |
37030341 |
T |
|
| Q |
114 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgt |
202 |
Q |
| |
|
||||||||||| ||||||||| |||| | |||||||| | ||||||||||| |||||| ||||||||||||||| ||||||||||||| |
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| T |
37030340 |
gaggcagagggaattgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgt |
37030252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 26756272 - 26756101
Alignment:
| Q |
14 |
tgagatgaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaa |
113 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||| | ||| ||||||||||||||||||| || |||| |||||||||||||||||| |||||||| || |
|
|
| T |
26756272 |
tgagaagaagacagaggcagaagcacagatagcattggcaaatgcaacattttatgctcgtaaacaagcagccgaagcagagctatatgcaaagaagaag |
26756173 |
T |
|
| Q |
114 |
gaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttgga |
185 |
Q |
| |
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||||| |||||||| |||||||||||||||| |||||| | || ||||||||| |||||||| ||||||||| |
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| T |
26756172 |
gaggcggaggggatcgtgacacttgggaatggtcaaggggtgtgtgtaagtacccttctcaacgcacttgga |
26756101 |
T |
|
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