View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13963_low_18 (Length: 212)
Name: NF13963_low_18
Description: NF13963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13963_low_18 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 41240673 - 41240884
Alignment:
| Q |
1 |
ctaagttcgtaagatatttcaatcttgttaaagccttatttggaaacctaccactcaatttattattagatacatttaaatataccaatcttgtacaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41240673 |
ctaagttcgtaagatatttcaatcttgttaaagccttatttggaaacctaccactcaattgattattggatacatttaaatataccaatcttgtacaatg |
41240772 |
T |
|
| Q |
101 |
caaaattgagaatgaaatagtccctttgatattattattagctaaactaaccactttaagcttttggagtctacataatgaatctgcatcaaatatacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41240773 |
caaaattgagaatgaaatagtccctttgatattattattagctaaactaaccactttaagcttttggagtctacataatgaatctgcatcaaatatacca |
41240872 |
T |
|
| Q |
201 |
ctaaggttcatg |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41240873 |
ctaaggttcatg |
41240884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 32650325 - 32650394
Alignment:
| Q |
138 |
ttagctaaactaaccactttaagcttttggagtctacataatgaatctgcatcaaatataccactaaggt |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| || ||||||||| |
|
|
| T |
32650325 |
ttagctaaactaaccattttaagcttttggagtctgcatagtgaatctgcatcaaacatgacactaaggt |
32650394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University