View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13963_low_3 (Length: 494)
Name: NF13963_low_3
Description: NF13963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13963_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 42691513 - 42691429
Alignment:
| Q |
217 |
tttcatcaccattttcaaatcatgtcatttgtatctcactcaaagtaattttagaacattatggatttagaattggttataaaga |
301 |
Q |
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| T |
42691513 |
tttcatcaccattttcaaatcacgtcatttgtatctcactcaaagtaattttagaacattatggatttagaattggttataaaga |
42691429 |
T |
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Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 42691318 - 42691245
Alignment:
| Q |
326 |
ataggcgacggtgagatccaattaggaagcagcacagcaacatccacctattttccaatcaaatcaaactctat |
399 |
Q |
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| T |
42691318 |
ataggcgacggtgagatccaattaggaagcagcacagcaacatccacctattttccaatcaaatcaaactctat |
42691245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 42691720 - 42691620
Alignment:
| Q |
9 |
atataacacaaat-agaaaatacggatagacagtcacattagtgtcatccattcggctagtactatcaacaaaggagaaacatttattttttagggatca |
107 |
Q |
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| T |
42691720 |
atataacacaaattaggaaatacatataaagagttacattggtgtcattcattcggctagtattatcaacaaaggagaaacattt-ttttttagggatca |
42691622 |
T |
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| Q |
108 |
aa |
109 |
Q |
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|| |
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| T |
42691621 |
aa |
42691620 |
T |
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