View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13963_low_4 (Length: 449)
Name: NF13963_low_4
Description: NF13963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13963_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 449
Target Start/End: Complemental strand, 23150443 - 23150007
Alignment:
| Q |
20 |
cacaagcccaaacatgttagtgtccaactcaatagggttaaatcctttctatcacataaacacatcaatgggtagttttagatttcctcattttgtaaca |
119 |
Q |
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| T |
23150443 |
cacaagcccaaacacgttagtgtccaactcaatagggttaaatcctttctatcccataaacacatcaatgggtagtttcagatttcctcattttgtaaca |
23150344 |
T |
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| Q |
120 |
cttcaacgattaataacgatagtagaaatcctacattgatgaagcgtagaccgtaaaggactctcatatcttcataaagtatcattgccaacgtctataa |
219 |
Q |
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| T |
23150343 |
cttcaacgactaataacgatggcaaaaattccatattgatgaagcgtcgaccgtaatggactctgatatcttcgcaaagtatcattgctaacgtctataa |
23150244 |
T |
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| Q |
220 |
aagacatccttcacaaccaacacaagatacacaattactatcctttaaatacatctcactctttgcttccaaggactaaggcttcagagtgtttgcgagt |
319 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| ||| |
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| T |
23150243 |
aagacatcatctacaaccaacacaagatacacaattactatcctttaaatacatctcactctttgcttccaaggacttggacttcagagtgcttgcaagt |
23150144 |
T |
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| Q |
320 |
a-------cctcaatcttcaaccttgatagatcgttgttcgacgtcaaccatcacttcttatgacctcgaattagttccgccgtatgcaggaactagttt |
412 |
Q |
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| T |
23150143 |
atccccaccctcaatcttcaaccttgatagatcgttgttcgacgtcaaccatcacttcttatgacctcgaattagttcctccgtatgtgggaactagttt |
23150044 |
T |
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| Q |
413 |
cccattaatcttaatttccactaaagatcaaaacctc |
449 |
Q |
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| T |
23150043 |
cccattaaacttaatttccactaaagatcaaaacctc |
23150007 |
T |
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