View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13963_low_6 (Length: 389)
Name: NF13963_low_6
Description: NF13963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13963_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 49202432 - 49202083
Alignment:
| Q |
16 |
ctttaatattggatgaatgttttcaatatttagtgttggctataatataactatactactgaatcactttttcggtgattaaaactctggatggtgtagg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49202432 |
ctttaatattggatgaatgttttcaatatttagcgttggctataatataactatactactgaatcactttttcggtgattcaaactctggatggtgtagg |
49202333 |
T |
|
| Q |
116 |
tacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcgtcagcaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49202332 |
tacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcgtcagcaga |
49202233 |
T |
|
| Q |
216 |
tgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaaggagcg |
315 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49202232 |
tgcaacattttatgcttgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaaggagcg |
49202133 |
T |
|
| Q |
316 |
tatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
365 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49202132 |
tatgtaagtacacttctgaatgcacttggaaacaactacacagctgtaag |
49202083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 47 - 365
Target Start/End: Complemental strand, 49187418 - 49187103
Alignment:
| Q |
47 |
agtgttggctataatataactatactactgaatcactttttcggtgattaaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaa |
146 |
Q |
| |
|
|||||||||||| ||||||||||||| | || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49187418 |
agtgttggctattatataactatact---gtattacttttttggtgattaaaactttggatggtgtaggtacaagaagcaaactgggagctgtacaagaa |
49187322 |
T |
|
| Q |
147 |
gcagaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagcc |
246 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||| |
|
|
| T |
49187321 |
acagaaagagactgaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcgtcggcagatgcaacattttatgctagcaaacaagcagct |
49187222 |
T |
|
| Q |
247 |
gaagcagagctatacgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaa |
346 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49187221 |
gaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacacttggacaagctcaaggagcgtatgtaagtacacttctcaatgcacttggaa |
49187122 |
T |
|
| Q |
347 |
acaactacacagctgtaag |
365 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
49187121 |
acgactacacagctgtaag |
49187103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 72 - 365
Target Start/End: Complemental strand, 49191087 - 49190794
Alignment:
| Q |
72 |
tactgaatcactttttcggtgattaaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctg |
171 |
Q |
| |
|
||||| |||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||| |
|
|
| T |
49191087 |
tactggatcacttttttggtgattgaaattctggatggtataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctg |
49190988 |
T |
|
| Q |
172 |
tatgagaagaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaa |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
49190987 |
tatgagaagaaggcagaggcagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagcagctgaagcagagctatatgcaaagaaaa |
49190888 |
T |
|
| Q |
272 |
aagaggcagaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
365 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49190887 |
aggaggcagagggaattgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaag |
49190794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 91 - 365
Target Start/End: Complemental strand, 49207312 - 49207038
Alignment:
| Q |
91 |
tgattaaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaaggcagagg |
190 |
Q |
| |
|
||||| ||| |||||||| | ||||||||||| || |||||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49207312 |
tgattgaaattctggatgctctaggtacaagaggctaactgggaattatacaagaaacaaaaagaggctgaagcaattctgtatgagaagaaggcagagg |
49207213 |
T |
|
| Q |
191 |
cagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggattgt |
290 |
Q |
| |
|
||||||| || ||||| | |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49207212 |
cagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggattat |
49207113 |
T |
|
| Q |
291 |
gacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49207112 |
gacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
49207038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 101 - 365
Target Start/End: Complemental strand, 49211876 - 49211612
Alignment:
| Q |
101 |
tctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcaca |
200 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||| | |||||||| || || ||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49211876 |
tctggatgctgtaggtacaagaggctaactgggaattatacaagaaacaaaaggaggcagaagcaattctgtttgagaagaaggcagaggcagaagcaca |
49211777 |
T |
|
| Q |
201 |
gaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggattgtgacacttggg |
300 |
Q |
| |
|
||||| | |||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49211776 |
aaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctgtacgcaaagaaaaaagaggcagaggggattgtgacacttggg |
49211677 |
T |
|
| Q |
301 |
aatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
49211676 |
aatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactatacagcagtaag |
49211612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 103 - 365
Target Start/End: Original strand, 32593229 - 32593491
Alignment:
| Q |
103 |
tggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcacaga |
202 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| | |||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32593229 |
tggatggtttaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaaggcagaggcagaagcacaga |
32593328 |
T |
|
| Q |
203 |
aagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggattgtgacacttgggaa |
302 |
Q |
| |
|
|||| | |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32593329 |
aagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacacttgggaa |
32593428 |
T |
|
| Q |
303 |
tgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
365 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
32593429 |
tgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaag |
32593491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 84 - 362
Target Start/End: Complemental strand, 37030530 - 37030252
Alignment:
| Q |
84 |
ttttcggtgattaaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaag |
183 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37030530 |
tttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaag |
37030431 |
T |
|
| Q |
184 |
gcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagagg |
283 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||| |||| |||| ||| ||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
37030430 |
gcagaggcagaagcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagg |
37030331 |
T |
|
| Q |
284 |
ggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgt |
362 |
Q |
| |
|
| ||||||||| |||| | |||||||| | ||||||||||| |||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
37030330 |
gaattgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgt |
37030252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 112 - 365
Target Start/End: Complemental strand, 31527163 - 31526910
Alignment:
| Q |
112 |
taggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcgtcag |
211 |
Q |
| |
|
||||||||||| || |||||||| | |||| ||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31527163 |
taggtacaagaggctaactgggaattatacaggaaacaaaaagaagcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattgt |
31527064 |
T |
|
| Q |
212 |
cagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527063 |
cagatgcaacattttatgcgcgcaagcaagcagccgaagcggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
31526964 |
T |
|
| Q |
312 |
agcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
365 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
31526963 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaag |
31526910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 101 - 365
Target Start/End: Complemental strand, 51824064 - 51823800
Alignment:
| Q |
101 |
tctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcaca |
200 |
Q |
| |
|
|||| ||||| || |||||||| || |||||||| | |||||||| || ||||| || |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51824064 |
tctgaatggtttatgtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtacgagaagaaggcagaggcagaagcaca |
51823965 |
T |
|
| Q |
201 |
gaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggattgtgacacttggg |
300 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51823964 |
gaaagcattggcagatgcaacattttatgcgtgcaagcaagcagctgaagcagatctatacgcaaagaaaaaagaggcagaggggattgtgacacttgga |
51823865 |
T |
|
| Q |
301 |
aatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaag |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
51823864 |
aatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaag |
51823800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 79 - 345
Target Start/End: Complemental strand, 26756367 - 26756101
Alignment:
| Q |
79 |
tcactttttcggtgattaaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgaga |
178 |
Q |
| |
|
||||| ||| ||||||| ||| ||||||| ||| ||| |||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
26756367 |
tcactattttggtgattcaaattctggatagtgcaggcacaagaggcaaactgggagctgtacaagaaacaaaaagaggcagaagcaattctgtatgaga |
26756268 |
T |
|
| Q |
179 |
agaaggcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgctcgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggc |
278 |
Q |
| |
|
||||| |||||||||||||||||| ||| | ||| ||||||||||||||||||| || |||| |||||||||||||||||| |||||||| || ||||| |
|
|
| T |
26756267 |
agaagacagaggcagaagcacagatagcattggcaaatgcaacattttatgctcgtaaacaagcagccgaagcagagctatatgcaaagaagaaggaggc |
26756168 |
T |
|
| Q |
279 |
agaggggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttgga |
345 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| | || ||||||||| |||||||| ||||||||| |
|
|
| T |
26756167 |
ggaggggatcgtgacacttgggaatggtcaaggggtgtgtgtaagtacccttctcaacgcacttgga |
26756101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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