View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13963_low_9 (Length: 313)
Name: NF13963_low_9
Description: NF13963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13963_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 39215728 - 39216009
Alignment:
| Q |
14 |
ttctgtctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39215728 |
ttctgtctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgt |
39215827 |
T |
|
| Q |
114 |
catttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaactacaagcatag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39215828 |
catttgtttggtttcctcaacttgtgtcactgtacaaagcatccattgtgaagtttggcctgtctttgtagccgctttgtcaaggaaactacaagcatag |
39215927 |
T |
|
| Q |
214 |
aagaagtgatgtatgcaaattaaatgatcaacacccaatctttgtgacatg-nnnnnnntggggaaatttgaaaggatataact |
296 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
39215928 |
aagaagtgatgcatgcaaattaaatgatcaacacccaatc--tgtgacatgaaaaaagatggggaaatttgaaaggatataact |
39216009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 39223345 - 39223595
Alignment:
| Q |
14 |
ttctgtctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgt |
113 |
Q |
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||||||||||||||||||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
39223345 |
ttctgtctagcgtggtgccttgtttaacgaagagtgttgtcgattgaactagcaatgtgcttgggataagtgttgtaatcaaaataggtatcatttttgt |
39223444 |
T |
|
| Q |
114 |
catttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaactacaagcatag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
39223445 |
catttgtttggtttcctcaacttgtgtcactgtacaaagcatccacggtgaagtttggcctgtcttcgtagccgctttgtctaggaaactacaagcatag |
39223544 |
T |
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| Q |
214 |
aagaagtgatgtatgcaaattaaatgatcaacacccaatctttgtgacatg |
264 |
Q |
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||||||||||| ||||||||||||| | |||||||||||||||||||||| |
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| T |
39223545 |
aagaagtgatgcatgcaaattaaatttttaacacccaatctttgtgacatg |
39223595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 39194123 - 39194265
Alignment:
| Q |
82 |
agtgttgtaatcaaaatcggaatcatttttgtcatttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttg |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39194123 |
agtgttgtaatcaaaatcggaatcatttttgtcatttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttg |
39194222 |
T |
|
| Q |
182 |
tagccgctttgtcaaggaaactacaagcatagaagaagtgatg |
224 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39194223 |
tagccgctttgtcaaggaaactacaagcatataagaagtgatg |
39194265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 39177274 - 39177465
Alignment:
| Q |
17 |
tgtctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcat |
116 |
Q |
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||||||| ||| |||||||||||||||||||||| || ||||||| |||||||||||||| |||| ||||||||||| ||| ||||||||||||||||| |
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| T |
39177274 |
tgtctagtgtgatgccttgtttaatgaagagtgtggtcgattgaatcatcaatgtgcttggcataattgttgtaatcagaataggaatcatttttgtcat |
39177373 |
T |
|
| Q |
117 |
ttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaactacaag |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||| |||||||||||||||||||||| |
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| T |
39177374 |
ttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggcgacgtttggccggtctttatagctgctttgtcaaggaaactacaag |
39177465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 39193992 - 39194073
Alignment:
| Q |
14 |
ttctgtctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaa |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39193992 |
ttctgtctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaa |
39194073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 39256992 - 39257166
Alignment:
| Q |
25 |
gtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcatttgtttgg |
124 |
Q |
| |
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||||| |||||||||||||||||||| |||||| | || || |||||||| |||| |||| |||||||||| || |||| ||| ||||||| |||| |
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| T |
39256992 |
gtggtaccttgtttaatgaagagtgtgaatgattgcattaccatggtgcttggaataattgttataatcaaaataggtatcagtttaatcatttgcttgg |
39257091 |
T |
|
| Q |
125 |
tttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaagga |
199 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||| ||||||||||||| |
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| T |
39257092 |
tttcctcaacttgtgtcactgtacatagcatccatgatgaagtttggccagttgttacagctgctttgtcaagga |
39257166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 39260238 - 39260419
Alignment:
| Q |
19 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcattt |
118 |
Q |
| |
|
||||| || ||||||||| | |||||||| || |||| |||| ||| | |||||||| ||| |||||||||||| | || | |||||||||||||| |
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| T |
39260238 |
tctagagttgtgccttgtctgatgaagagcgtggttgtttgagatataatggtgcttggaatacatgttgtaatcaatacaggtaacatttttgtcattt |
39260337 |
T |
|
| Q |
119 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaa |
200 |
Q |
| |
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|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
39260338 |
gtttggtttcttcaatttgtgtcacagtacaaagcatccatggtgaagtttggccagtcttcacagcagctttgtcaaggaa |
39260419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 39244815 - 39245002
Alignment:
| Q |
19 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcattt |
118 |
Q |
| |
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||||| |||||||||||||| | ||||||||| ||| |||| | | | | ||||||| ||| ||||| |||||| || || |||||||||||||||| |
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| T |
39244815 |
tctagagtggtgccttgtttgacgaagagtgtgtttgtttgagcgaaaattatgcttggaatacatgttgcaatcaatatagggatcatttttgtcattt |
39244914 |
T |
|
| Q |
119 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaactaca |
206 |
Q |
| |
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|||| |||||||||| ||||||||| || |||||||||||||||||||||||| | ||||| || |||||||||||||||||||| |
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| T |
39244915 |
gttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaaggaaactaca |
39245002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 39250747 - 39250938
Alignment:
| Q |
16 |
ctgtctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtca |
115 |
Q |
| |
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|||||||| || ||||||||||| | ||||||||| ||| |||| | | | ||||||||| ||| || || |||||| || || ||||||||||||| |
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| T |
39250747 |
ctgtctagagtagtgccttgtttgacgaagagtgtgtttgtttgagcaaaaattgtgcttggaatacatgatgcaatcaatatagggatcatttttgtca |
39250846 |
T |
|
| Q |
116 |
tttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaactacaa |
207 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||| || |||||||||||||| |||||| |
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|
| T |
39250847 |
tttgttttgtttcctcaatttgtgtcacagtacaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaaggaatctacaa |
39250938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 39239088 - 39239208
Alignment:
| Q |
90 |
aatcaaaatcggaatcatttttgtcatttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgct |
189 |
Q |
| |
|
|||| |||| |||| || |||||||||||| || |||||||||| |||||||||||||||||||||||||| ||| |||| || |||||| |||||||| |
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| T |
39239088 |
aatcgaaataggaaccagttttgtcatttgcttagtttcctcaatttgtgtcactgtacaaagcatccatgttgatttttgtccggtctttatagccgct |
39239187 |
T |
|
| Q |
190 |
ttgtcaaggaaactacaagca |
210 |
Q |
| |
|
|||||||||||||| |||||| |
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| T |
39239188 |
ttgtcaaggaaactgcaagca |
39239208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 39194112 - 39194068
Alignment:
| Q |
14 |
ttctgtctagcgtggtgccttgtttaatgaagagtgtagttgatt |
58 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39194112 |
ttctgtctagcgtggtgccttgtttaatgaagagtgtagttgatt |
39194068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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