View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13964_low_1 (Length: 658)
Name: NF13964_low_1
Description: NF13964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13964_low_1 |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 8382039 - 8382429
Alignment:
| Q |
16 |
caagttgttgaatgtagggaatgacacgagggattatatcatccgacagttccatgggtttggatttggcttgctttcccatcttatatgaatccttcaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8382039 |
caagttgttgaatgtagggaatgacacgagggattatatcatccgacagttccatgggtttggatttggctttctttcccatcttatatgaatccttcaa |
8382138 |
T |
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| Q |
116 |
gtccccaagcacaagtctataagaatttcctttacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcactctc |
215 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8382139 |
gtccccaagcacaagtctataagaatttccattacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagtactctc |
8382238 |
T |
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| Q |
216 |
catgtgtataccaaaccaagtgttacagtgatgagaattatgccataatatatggccaatgatgcttccatttctctgcttgtaggtgataaaaagtagt |
315 |
Q |
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| T |
8382239 |
catgtgtatactaaaccaagtgttacagtgatgagaattatgccataatatatggccaatgatgcttccatttctctgcttgtaggtgataaaaagtagt |
8382338 |
T |
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| Q |
316 |
agatagagaatagagaatgcaacaatgaaaccaaattaagtagagaatagagaatttatggccagtgaatgatgcttcatttctctaattg |
406 |
Q |
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| T |
8382339 |
agatagagaatagagaatgcaacaatgaaaccaaattaagtagagaatagagaatttatggccagtgaatgatgcttcatttctctaattg |
8382429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 441 - 633
Target Start/End: Original strand, 8382429 - 8382622
Alignment:
| Q |
441 |
gctttatagtatttggtaggtgtggggaagtaagaatcattcattattgtt-gtgggagcattgatgtggacgtgggtttttcttacctttttacttgtg |
539 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
8382429 |
gctttatagaatttggtaggtgtgggcaagtaagaatcattcattattgtttgtgggagcattggtgtggacgtgggtttttcttacctttttactggtg |
8382528 |
T |
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| Q |
540 |
ttttggaatctagttggttgatctctgctaagagaaacagaaagggaaagagaaagtgtgggcaataataatagtggtttgatttctattaaaa |
633 |
Q |
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| T |
8382529 |
ttttggaatctagttggttgatctctgctaagagaaacagaaagggaaagagaaagtgtgggcaataataatagtggtttgatttctattaaaa |
8382622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 30381794 - 30381559
Alignment:
| Q |
21 |
tgttgaatgtagggaatgacacgagggattatatcatccgacagttccatgggtttggatttggcttgctttcccatcttatatgaatccttcaagtccc |
120 |
Q |
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||||| ||||||||||| ||||| || |||||||||| || || | ||||| ||| |||||||||| ||| |||||||| | ||| || | ||||| |
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| T |
30381794 |
tgttggatgtagggaattacacgtggtgttatatcatcggagagattcatggattttgatttggcttctttttccatcttaaaaagatcttttatgtccc |
30381695 |
T |
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| Q |
121 |
caagcacaagtctataagaatttcctttacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcactctccatgt |
220 |
Q |
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|||||| || ||||| |||||||||| | | |||||||||| |||||||||||||||| |||||||| ||| ||| | | || ||| ||| |||||| |
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| T |
30381694 |
caagcaaaatcctatatgaatttccttgaaagccttgttctcttaagagcttctctagcttctttggcctcagccacaacaaactcaacaccttccatgc |
30381595 |
T |
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| Q |
221 |
gtataccaaaccaagtgttacagtgatgagaattat |
256 |
Q |
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||| |||||||||||||||| ||||||||||||| |
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| T |
30381594 |
ccatatcaaaccaagtgttacaatgatgagaattat |
30381559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 120 - 257
Target Start/End: Original strand, 23785596 - 23785733
Alignment:
| Q |
120 |
ccaagcacaagtctataagaatttcctttacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcactctccatg |
219 |
Q |
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||||||| ||||||||||| || |||| | |||||||||| ||| |||||||||| | |||||||||||| ||| |||||||||| || ||||||| |
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| T |
23785596 |
ccaagcaaaagtctataagggttcccttgaaggccttgttctcttaaaagcttctctatcttctttggcttcagccacatccaattcaataccctccatg |
23785695 |
T |
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| Q |
220 |
tgtataccaaaccaagtgttacagtgatgagaattatg |
257 |
Q |
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|||||||||||||| ||| |||||||||||||||||| |
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| T |
23785696 |
cgtataccaaaccaaatgtcacagtgatgagaattatg |
23785733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 23766136 - 23765999
Alignment:
| Q |
120 |
ccaagcacaagtctataagaatttcctttacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcactctccatg |
219 |
Q |
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||||||| ||||||||||| || |||| | |||||||||| ||| |||||||| | | |||||||||||| ||| |||||||||| || ||||||| |
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| T |
23766136 |
ccaagcaaaagtctataagggttcccttgaaggccttgttctcttaaaagcttctccatcttctttggcttcagccacatccaattcaataccctccatg |
23766037 |
T |
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| Q |
220 |
tgtataccaaaccaagtgttacagtgatgagaattatg |
257 |
Q |
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| T |
23766036 |
cgtataccaaaccaaatgtcacagtgatgagaattatg |
23765999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 23788833 - 23788730
Alignment:
| Q |
153 |
ccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcactctccatgtgtataccaaaccaagtgttacagtgatgagaa |
252 |
Q |
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|||||||||| ||| |||||||||| | |||||||||||| ||| |||||||||| | |||||| |||||||||||||| ||| ||||||||||||| |
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| T |
23788833 |
ccttgttctcttaaaagcttctctatcttctttggcttcagccacatccaattcaatgccctccatacgtataccaaaccaaatgtcacagtgatgagaa |
23788734 |
T |
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| Q |
253 |
ttat |
256 |
Q |
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|||| |
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| T |
23788733 |
ttat |
23788730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 30391257 - 30391075
Alignment:
| Q |
29 |
gtagggaatgacacgagggattatatcatccgacagttccatgggtttggatttggcttgctttcccatcttatatgaatccttcaagtccccaagcaca |
128 |
Q |
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||||||||||||||| || | |||||||| || || | ||| | |||||||||||||| |||| |||| ||| | | ||||||| ||| |||| | | |
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| T |
30391257 |
gtagggaatgacacgtggcgtgatatcatcggagaggttcatagatttggatttggcttccttttccatgttaaaatactccttcatgtctccaactaaa |
30391158 |
T |
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| Q |
129 |
agtctataagaatttcctttacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagcac |
211 |
Q |
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| T |
30391157 |
agcctatattgattccctttaagtccttgttctcttaagagcttctctagcttctttggcttcaaccataacaaattcagcac |
30391075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 658
Target Start/End: Complemental strand, 1902010 - 1901977
Alignment:
| Q |
625 |
ctattaaaataaagagaaatgatatttgtacaac |
658 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
1902010 |
ctattaaaaaaaagagaaatgatatttgtacaac |
1901977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 658
Target Start/End: Complemental strand, 1911456 - 1911423
Alignment:
| Q |
625 |
ctattaaaataaagagaaatgatatttgtacaac |
658 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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| T |
1911456 |
ctattaaaaaaaagagaaatgatatttgtacaac |
1911423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 622 - 658
Target Start/End: Complemental strand, 35376638 - 35376602
Alignment:
| Q |
622 |
tttctattaaaataaagagaaatgatatttgtacaac |
658 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||| |
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| T |
35376638 |
tttcttttaaattaaagagaaatgatatttgtacaac |
35376602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 630 - 658
Target Start/End: Complemental strand, 49615354 - 49615326
Alignment:
| Q |
630 |
aaaataaagagaaatgatatttgtacaac |
658 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
49615354 |
aaaataaagagaaatgatatttgtacaac |
49615326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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