View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13964_low_3 (Length: 504)

Name: NF13964_low_3
Description: NF13964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13964_low_3
NF13964_low_3
[»] chr6 (8 HSPs)
chr6 (50-443)||(28956281-28956672)
chr6 (395-465)||(26680659-26680729)
chr6 (397-465)||(14856028-14856096)
chr6 (397-465)||(14847170-14847238)
chr6 (69-185)||(28994241-28994362)
chr6 (380-477)||(13466746-13466845)
chr6 (398-465)||(31023400-31023467)
chr6 (395-465)||(10345723-10345792)
[»] chr4 (7 HSPs)
chr4 (395-465)||(53982183-53982253)
chr4 (395-465)||(6156640-6156710)
chr4 (395-465)||(6162337-6162407)
chr4 (393-465)||(20192592-20192664)
chr4 (393-465)||(20197956-20198028)
chr4 (401-476)||(12733907-12733982)
chr4 (395-467)||(16433647-16433718)
[»] chr2 (15 HSPs)
chr2 (395-465)||(26694242-26694312)
chr2 (395-465)||(26702338-26702408)
chr2 (395-465)||(630820-630890)
chr2 (395-465)||(636371-636441)
chr2 (395-465)||(7909963-7910033)
chr2 (395-465)||(7917418-7917488)
chr2 (395-465)||(14893319-14893389)
chr2 (395-465)||(22430437-22430507)
chr2 (395-465)||(22436031-22436101)
chr2 (395-465)||(43777080-43777150)
chr2 (398-465)||(14898875-14898942)
chr2 (395-465)||(22425067-22425137)
chr2 (395-465)||(43771554-43771622)
chr2 (398-465)||(1519238-1519305)
chr2 (398-458)||(14188410-14188470)
[»] chr7 (12 HSPs)
chr7 (378-465)||(557872-557959)
chr7 (378-465)||(576055-576142)
chr7 (395-465)||(42167621-42167691)
chr7 (395-465)||(16648512-16648582)
chr7 (395-465)||(17622873-17622943)
chr7 (395-459)||(25499165-25499229)
chr7 (393-465)||(32148564-32148636)
chr7 (395-477)||(11726471-11726552)
chr7 (386-439)||(11726398-11726451)
chr7 (395-459)||(25493928-25493992)
chr7 (395-465)||(44655688-44655758)
chr7 (395-440)||(42208982-42209027)
[»] chr3 (16 HSPs)
chr3 (378-477)||(2168639-2168738)
chr3 (378-465)||(2174218-2174305)
chr3 (378-465)||(13990904-13990991)
chr3 (395-465)||(23338918-23338988)
chr3 (395-465)||(23344465-23344535)
chr3 (395-465)||(48216336-48216406)
chr3 (378-465)||(13985332-13985419)
chr3 (378-465)||(40802562-40802649)
chr3 (395-465)||(3110509-3110579)
chr3 (395-465)||(3112126-3112196)
chr3 (395-465)||(40800638-40800708)
chr3 (395-465)||(13980656-13980726)
chr3 (398-465)||(9730313-9730380)
chr3 (283-339)||(13992089-13992145)
chr3 (395-440)||(34578842-34578887)
chr3 (283-339)||(13980757-13980813)
[»] chr8 (4 HSPs)
chr8 (395-465)||(12756162-12756232)
chr8 (395-465)||(24052034-24052104)
chr8 (395-465)||(41043568-41043638)
chr8 (395-465)||(41048941-41049011)
[»] chr5 (6 HSPs)
chr5 (395-465)||(28366981-28367051)
chr5 (395-465)||(28375721-28375791)
chr5 (398-459)||(34647940-34648001)
chr5 (395-465)||(1536555-1536625)
chr5 (400-475)||(54428-54502)
chr5 (395-465)||(30963174-30963242)
[»] chr1 (9 HSPs)
chr1 (395-465)||(15711132-15711202)
chr1 (395-465)||(27178970-27179040)
chr1 (395-465)||(27194971-27195041)
chr1 (386-477)||(16498712-16498803)
chr1 (382-465)||(17721815-17721898)
chr1 (395-465)||(15716713-15716783)
chr1 (395-465)||(26711477-26711547)
chr1 (395-465)||(33498419-33498489)
chr1 (395-459)||(3343879-3343943)
[»] scaffold0004 (2 HSPs)
scaffold0004 (395-465)||(345671-345741)
scaffold0004 (395-465)||(350992-351062)
[»] scaffold0169 (2 HSPs)
scaffold0169 (395-465)||(11047-11117)
scaffold0169 (283-339)||(8698-8754)
[»] scaffold0124 (1 HSPs)
scaffold0124 (395-465)||(39553-39623)
[»] scaffold0121 (1 HSPs)
scaffold0121 (395-465)||(11426-11496)
[»] scaffold0211 (1 HSPs)
scaffold0211 (395-439)||(26993-27037)


Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 50 - 443
Target Start/End: Original strand, 28956281 - 28956672
Alignment:
Q  50 ttccttctccttactaaacttgtgtacatttttctt-gtttttctagattaagacaagtaagagaatttaatttctcaatattatctagaatcgatcacc 148  Q
    |||||| || |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28956281 ttccttttcgttactaaacttgtgtacatttttctttgtttttcgagattaagacaagtaagagaatttaatttctcaatattatctagaatcgatcacc 28956380  T
Q  149 caacataatttaaatagttttcctgcatacataatttctt-agtggagtgactannnnnnnncttttcatttagttgcaaaagctttggtacatgcaaaa 247  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||  |         |||| ||||||||||||||||||||||||||||||||    
T  28956381 caacataatttaaatagttttcctgcatacataatttatttagtggagtgaacattttt----tttttatttagttgcaaaagctttggtacatgcaaaa 28956476  T
Q  248 caaataaaaatgattcaataaaatgattcttgcgatatgaatattataagtagatggctatttagcaattgagttattgtgtcatattattaactcataa 347  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||| ||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  28956477 caaataaaaatgattctataaaatgattcttgctatatgaatattataagaagacggctatttcacaattgagttattgtgtcatattattaactcataa 28956576  T
Q  348 tttgtttcccaactcataactcatgcatactattgtgtttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgta 443  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||  || ||||||||||||||||||| |||||||||    
T  28956577 tttgtttcccacctcataactcatgcatactattgtgtttgtttccaaagttattgtatttcactagaaatagagctcacatgtaatctaattgta 28956672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 26680659 - 26680729
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || |||||||||||||||||||||    
T  26680659 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataat 26680729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 465
Target Start/End: Original strand, 14856028 - 14856096
Alignment:
Q  397 gtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  14856028 gtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 14856096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 465
Target Start/End: Original strand, 14847170 - 14847238
Alignment:
Q  397 gtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||| || ||||||| |||| ||||||||||||| || ||||||||||||||| |||||    
T  14847170 gtcattgtatttctctataaatagaactcatatgtaacctaattatacatcacaagagaataatataat 14847238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 28994241 - 28994362
Alignment:
Q  69 ttgtgtacatttttcttgtttttctagattaagacaagtaagagaatttaatttctcaatat------tatctagaatcgatcacccaacataatttaaa 162  Q
    |||| ||||||||  |||||||| ||| || ||||||||||||||||||||||||||| |||      ||| |||||| |||||||||| | ||| ||||    
T  28994241 ttgtatacattttctttgttttt-tagtttcagacaagtaagagaatttaatttctcactattaactatatgtagaatggatcacccaaaaaaatataaa 28994339  T
Q  163 tagttttcctgcatacataattt 185  Q
    || ||||||  ||||||||||||    
T  28994340 taattttccaacatacataattt 28994362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 477
Target Start/End: Complemental strand, 13466845 - 13466746
Alignment:
Q  380 ttgtgtttgttttcaaagtcattgtatttctttaaaaat-agagctcacatgtaacctaattgtaa-atcacaagagaataacataatacttttctctct 477  Q
    ||||| |||||||| |||||||| ||||| | || |||| ||| |||| || |||| ||||||||  ||||||||||||||| | |||||||||||||||    
T  13466845 ttgtgcttgttttccaagtcattatatttttctataaatgagatctcatatataacttaattgtatgatcacaagagaataataaaatacttttctctct 13466746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 31023400 - 31023467
Alignment:
Q  398 tcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||| |||| || |||||||| ||||||||||| |||||||| |||||| || ||||| |||||    
T  31023400 tcattgtagttctatataaatagagatcacatgtaacataattgtatatcacatgaaaataatataat 31023467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 10345792 - 10345723
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||| ||||||| || |||||||| ||||||||||| |||||| | | ||||||||||||| |||||    
T  10345792 aagtcattctatttctatataaatagagttcacatgtaacttaattg-acaacacaagagaataatataat 10345723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 53982183 - 53982253
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || |||||||||||||||||||||    
T  53982183 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataat 53982253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 6156640 - 6156710
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  6156640 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 6156710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 6162337 - 6162407
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  6162337 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 6162407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 465
Target Start/End: Complemental strand, 20192664 - 20192592
Alignment:
Q  393 caaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||||| || |||||||||| | ||||||||||||| || ||||||||||||||| |||||    
T  20192664 caaagtcattgtatttctctataaatagagcttatatgtaacctaattatacatcacaagagaataatataat 20192592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 465
Target Start/End: Complemental strand, 20198028 - 20197956
Alignment:
Q  393 caaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||||| || |||||||||| | ||||||||||||| || ||||||||||||||| |||||    
T  20198028 caaagtcattgtatttctctataaatagagcttatatgtaacctaattatacatcacaagagaataatataat 20197956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 12733982 - 12733907
Alignment:
Q  401 ttgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataatacttttctctc 476  Q
    |||||||||| || |||||||||||||||||||||||||||   ||||||||||||||| | |||| || ||||||    
T  12733982 ttgtatttctctataaatagagctcacatgtaacctaattggttatcacaagagaataatagaatatttatctctc 12733907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 467
Target Start/End: Original strand, 16433647 - 16433718
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataatac 467  Q
    |||||||||||||||  || ||||| | ||||||||||||||||| |||  || || ||||||||||||||||    
T  16433647 aagtcattgtatttcactataaataaa-ctcacatgtaacctaatcgtatgtcgcatgagaataacataatac 16433718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 26694242 - 26694312
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || |||||||||||||||||||||    
T  26694242 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataat 26694312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 26702338 - 26702408
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || |||||||||||||||||||||    
T  26702338 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataat 26702408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 630820 - 630890
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  630820 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 630890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 636371 - 636441
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  636371 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 636441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 7910033 - 7909963
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  7910033 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 7909963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 7917488 - 7917418
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  7917488 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 7917418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 14893319 - 14893389
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  14893319 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 14893389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 22430437 - 22430507
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  22430437 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 22430507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 22436031 - 22436101
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  22436031 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 22436101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 43777080 - 43777150
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  43777080 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 43777150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 14898875 - 14898942
Alignment:
Q  398 tcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  14898875 tcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 14898942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 22425067 - 22425137
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| |||||||| |||| || ||||||||||||||| |||||    
T  22425067 aagtcattgtatttctctataaatagagctcatatgtaacccaattatacatcacaagagaataatataat 22425137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 43771554 - 43771622
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || ||||||||||  ||| |||||||||| || ||||||||||||||| |||||    
T  43771554 aagtcattgtatttctctataaatagagct--catataacctaattatacatcacaagagaataatataat 43771622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 1519238 - 1519305
Alignment:
Q  398 tcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||||||||||| || |||||||||||| |||||||||||||  | ||  ||||||||||| |||||    
T  1519238 tcattgtatttctctataaatagagctcatatgtaacctaattagagataccaagagaataatataat 1519305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 458
Target Start/End: Original strand, 14188410 - 14188470
Alignment:
Q  398 tcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaata 458  Q
    |||||||| |||| || ||||||||  |||||||||| |||||||| | ||||||||||||    
T  14188410 tcattgtacttctctataaatagagaccacatgtaacataattgtacaccacaagagaata 14188470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 465
Target Start/End: Complemental strand, 557959 - 557872
Alignment:
Q  378 tattgtgtttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||||| ||| || | |||||||||||||||| || |||||||| ||| |||||||||||||||| ||||||||||||||| |||||    
T  557959 tattgtgcttgcttcccaagtcattgtatttctctataaatagagttcatatgtaacctaattgtacatcacaagagaataatataat 557872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 465
Target Start/End: Complemental strand, 576142 - 576055
Alignment:
Q  378 tattgtgtttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||||| ||| || | |||||||||||||||| || |||||||| ||| |||||||||||||||| ||||||||||||||| |||||    
T  576142 tattgtgattgcttcccaagtcattgtatttctctataaatagagttcatatgtaacctaattgtacatcacaagagaataatataat 576055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 42167691 - 42167621
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||| |||||||||||    
T  42167691 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagaaaataacataat 42167621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 16648512 - 16648582
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || |||||||||||| || |||||    
T  16648512 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaaaaatataat 16648582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 17622873 - 17622943
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || |||||||||||| || |||||    
T  17622873 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaaaaatataat 17622943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 459
Target Start/End: Original strand, 25499165 - 25499229
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataa 459  Q
    |||||||||||||||| || |||||||||||| ||||||||||||  || |||||||||||||||    
T  25499165 aagtcattgtatttctctataaatagagctcatatgtaacctaatgatacatcacaagagaataa 25499229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 465
Target Start/End: Original strand, 32148564 - 32148636
Alignment:
Q  393 caaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||||| || |||||||||| | ||||||||||||| || ||||||||| ||||| |||||    
T  32148564 caaagtcattgtatttctctataaatagagcttatatgtaacctaattatacatcacaagaaaataatataat 32148636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 477
Target Start/End: Complemental strand, 11726552 - 11726471
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataatacttttctctct 477  Q
    |||| ||||||||||| || |||||||||||||||||||||| |||| | | || |||||||||| ||||||||| |||||||    
T  11726552 aagttattgtatttctctataaatagagctcacatgtaaccttattg-acaacataagagaataatataatacttctctctct 11726471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 11726451 - 11726398
Alignment:
Q  386 ttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaat 439  Q
    |||||| |||||||||||| |||||||| |||||||| ||||||||||||||||    
T  11726451 ttgtttccaaagtcattgtgtttctttataaatagaggtcacatgtaacctaat 11726398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 459
Target Start/End: Original strand, 25493928 - 25493992
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataa 459  Q
    |||||||||||||||| || |||||||||||| ||||||| ||||  || |||||||||||||||    
T  25493928 aagtcattgtatttctctataaatagagctcatatgtaacataatgatacatcacaagagaataa 25493992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 44655688 - 44655758
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||| |||||||||| || ||||  |||||| ||||||||||||| || ||||||||||||||| |||||    
T  44655688 aagtctttgtatttctctataaattaagctcatatgtaacctaattatacatcacaagagaataatataat 44655758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 42208982 - 42209027
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaatt 440  Q
    |||||||||||||||| || |||||||||||| |||||||||||||    
T  42208982 aagtcattgtatttctctataaatagagctcatatgtaacctaatt 42209027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 477
Target Start/End: Complemental strand, 2168738 - 2168639
Alignment:
Q  378 tattgtgtttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataatacttttctctct 477  Q
    ||||||||||| |  | |||||||||||||||| || |||||||||||| ||||| ||||||| || ||||||||||||||| ||||| || ||||||||    
T  2168738 tattgtgtttgctccccaagtcattgtatttctctataaatagagctcatatgtagcctaattatacatcacaagagaataatataatcctcttctctct 2168639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 465
Target Start/End: Complemental strand, 2174305 - 2174218
Alignment:
Q  378 tattgtgtttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||||||||| |  | |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  2174305 tattgtgtttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 2174218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 465
Target Start/End: Original strand, 13990904 - 13990991
Alignment:
Q  378 tattgtgtttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||||||||| |  | |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  13990904 tattgtgtttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 13990991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 23338918 - 23338988
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  23338918 aagtcattgtatttctctataaatagagctcatatgtaacctaattatagatcacaagagaataatataat 23338988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 23344465 - 23344535
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  23344465 aagtcattgtatttctctataaatagagctcatatgtaacctaattatagatcacaagagaataatataat 23344535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 48216406 - 48216336
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  48216406 aagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataat 48216336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 378 - 465
Target Start/End: Original strand, 13985332 - 13985419
Alignment:
Q  378 tattgtgtttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||||||||| |  | |||||||||||||||| || |||||||| ||| ||||||||||||| || ||||||||||||||| |||||    
T  13985332 tattgtgtttgctccccaagtcattgtatttctctataaatagagatcatatgtaacctaattatacatcacaagagaataatataat 13985419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 378 - 465
Target Start/End: Complemental strand, 40802649 - 40802562
Alignment:
Q  378 tattgtgtttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||||| ||| || | |||||||||||||||| || |||||||||||| ||||||| ||||| || ||||||||||||||| |||||    
T  40802649 tattgtgcttgcttcccaagtcattgtatttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataat 40802562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 3110579 - 3110509
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||| ||||| || ||||||||||||||| |||||    
T  3110579 aagtcattgtatttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataat 3110509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 3112196 - 3112126
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||| ||||| || ||||||||||||||| |||||    
T  3112196 aagtcattgtatttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataat 3112126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 40800708 - 40800638
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || || |||||||||||| |||||    
T  40800708 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacataacaagagaataatataat 40800638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 13980726 - 13980656
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| |||||| ||||||||| ||  ||||||||||| |||||    
T  13980726 aagtcattgtatttctctataaatagagctcatatgtaatctaattgtacataccaagagaataatataat 13980656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 465
Target Start/End: Complemental strand, 9730380 - 9730313
Alignment:
Q  398 tcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||||||||||| || |||||||||||| |||||| |||||| || || |||||||||||| |||||    
T  9730380 tcattgtatttctctataaatagagctcatatgtaatctaattatacatgacaagagaataatataat 9730313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 13992145 - 13992089
Alignment:
Q  283 tatgaatattataagtagatggctatttagcaattgagttattgtgtcatattatta 339  Q
    |||||||||||||||| |||| |||| ||||||||| ||||||| |||||| |||||    
T  13992145 tatgaatattataagtggatgtctatatagcaattgggttattgggtcatactatta 13992089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Complemental strand, 34578887 - 34578842
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaatt 440  Q
    |||||||||||||||| || |||||||||| | |||||||||||||    
T  34578887 aagtcattgtatttctctataaatagagcttatatgtaacctaatt 34578842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 13980813 - 13980757
Alignment:
Q  283 tatgaatattataagtagatggctatttagcaattgagttattgtgtcatattatta 339  Q
    |||||||||||||||| |||| |||| ||| ||||| ||||||| |||||| |||||    
T  13980813 tatgaatattataagtggatgtctatataggaattgggttattgggtcatactatta 13980757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 12756232 - 12756162
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  12756232 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 12756162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 24052104 - 24052034
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  24052104 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 24052034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 41043568 - 41043638
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || |||||||||||||| ||||||    
T  41043568 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaatagcataat 41043638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 41048941 - 41049011
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||| || ||||||||| |||||||||||    
T  41048941 aagtcattgtatttatttataaatagagctcatatgtaacctaattatacatcacaagataataacataat 41049011  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 28367051 - 28366981
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  28367051 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 28366981  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 28375791 - 28375721
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  28375791 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 28375721  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 34648001 - 34647940
Alignment:
Q  398 tcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataa 459  Q
    ||||||||||||| || |||| ||||||| |||||||||||||||| |||||||||||||||    
T  34648001 tcattgtatttctgtataaattgagctcatatgtaacctaattgtacatcacaagagaataa 34647940  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 1536625 - 1536555
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| |||||||||||||  | ||  ||||||||||| |||||    
T  1536625 aagtcattgtatttctctataaatagagctcatatgtaacctaattagagataccaagagaataatataat 1536555  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 54502 - 54428
Alignment:
Q  400 attgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataatacttttctct 475  Q
    ||||||||||| || |||||||| |||||||||||  ||||||| | |||||| |||||| |||||| ||||||||    
T  54502 attgtatttctatataaatagagttcacatgtaacacaattgtacaacacaagtgaataatataata-ttttctct 54428  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 30963242 - 30963174
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || ||||||||||  ||| |||| ||||| || ||||||||||||||| |||||    
T  30963242 aagtcattgtatttctctataaatagagct--catataacttaattatacatcacaagagaataatataat 30963174  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 15711132 - 15711202
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||| || ||||||||||||||| |||||    
T  15711132 aagtcattgtatttctttataaatagagctcatatgtaacgtaattatacatcacaagagaataatataat 15711202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 27179040 - 27178970
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  27179040 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 27178970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 27195041 - 27194971
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  27195041 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataat 27194971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 477
Target Start/End: Complemental strand, 16498803 - 16498712
Alignment:
Q  386 ttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataatacttttctctct 477  Q
    |||||||| |||||||||||| ||| || |||||||||||| |||||||||||||| | | ||||||||||||| | |||| || |||||||    
T  16498803 ttgttttccaagtcattgtatctctctataaatagagctcatatgtaacctaattgcataccacaagagaataatagaatatttctctctct 16498712  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 382 - 465
Target Start/End: Original strand, 17721815 - 17721898
Alignment:
Q  382 gtgtttgttttcaaagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||  | |||||||| ||||||| || |||||||||||  |||||||||||||||| ||||||||||||||| |||||    
T  17721815 gtgtttgttccccaagtcattatatttctctataaatagagctcgtatgtaacctaattgtacatcacaagagaataatataat 17721898  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 15716713 - 15716783
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||| ||||| || ||||||||||||||| |||||    
T  15716713 aagtcattgtatttctctataaatagagctcatatgtaacgtaattatacatcacaagagaataatataat 15716783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 26711547 - 26711477
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| |||||||||||||  | ||||||||||||||| |||||    
T  26711547 aagtcattgtatttctctataaatagagctcatatgtaacctaattagacatcacaagagaataatataat 26711477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 33498489 - 33498419
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||| ||||| | ||||||||||||| || ||||||||||||||| |||||    
T  33498489 aagtcattgtatttctctataaatggagcttatatgtaacctaattatacatcacaagagaataatataat 33498419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 3343943 - 3343879
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataa 459  Q
    |||||||||||||||| || ||||||| || | ||||||||||||| || || |||||| |||||    
T  3343943 aagtcattgtatttctatataaatagaacttatatgtaacctaattatatataacaagaaaataa 3343879  T

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Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 345741 - 345671
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||||||||||||||||| || |||| |||| ||||| |||||    
T  345741 aagtcattgtatttctctataaatagagctcacatgtaacctaattatacatcataagaaaataatataat 345671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 351062 - 350992
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || |||| |||||||||| |||||    
T  351062 aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcataagagaataatataat 350992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 11047 - 11117
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| || ||||||||||| | ||  ||||||||||| |||||    
T  11047 aagtcattgtatttctctataaatagagctcatatataacctaattggatataccaagagaataatataat 11117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 8698 - 8754
Alignment:
Q  283 tatgaatattataagtagatggctatttagcaattgagttattgtgtcatattatta 339  Q
    |||||||||||||||| |||| |||| ||||||||| ||||||| |||||| |||||    
T  8698 tatgaatattataagtggatgtctatatagcaattgggttattgggtcatactatta 8754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 39553 - 39623
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| |||||||||||| ||| ||   |||||||||| |||||    
T  39553 aagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaataatataat 39623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 11496 - 11426
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaattgtaaatcacaagagaataacataat 465  Q
    |||||||||||||||| || |||||||||||| |||||||||||| ||| ||   |||||||||| |||||    
T  11496 aagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaataatataat 11426  T

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Target: scaffold0211 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 439
Target Start/End: Original strand, 26993 - 27037
Alignment:
Q  395 aagtcattgtatttctttaaaaatagagctcacatgtaacctaat 439  Q
    |||||||||||||||| || |||||||||||| ||||||| ||||    
T  26993 aagtcattgtatttctctataaatagagctcatatgtaacataat 27037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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