View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13964_low_4 (Length: 459)
Name: NF13964_low_4
Description: NF13964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13964_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 31425238 - 31424803
Alignment:
| Q |
1 |
taaatttgttgtgtggatttgagtcaaatagtcacattagagctgaggttgattgcaaggcatagctaagcaattaagacctacagtgaatttggttaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
31425238 |
taaatttgttgtgtggatttgagtcaaatagtcacattagagctgaggttg-------ggtatagctaagcaattaagacctacagtgaatttggttaaa |
31425146 |
T |
|
| Q |
101 |
ataattcgtcctgcaaagaaaagggtgaatacagatcgatcgatatatgataaaatcttaagaaagatatattagttgacttaaaaaagaaatattagtc |
200 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31425145 |
ataatttgtcctgcaaaggaaagggtgaatacagatcgatcgatatatgataaaatcctaagaaagatatattagttgacttaaaaaagaaatattagtc |
31425046 |
T |
|
| Q |
201 |
gatgattccaagcaagcaattacgccgaactcagctataaaagtgtcgctacacgccacgccttagatatgattaccttttaatacattttctcacactc |
300 |
Q |
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|||||||||| ||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
31425045 |
gatgattccacgcaagcaattacggcaaactcagctataaaagcgtcgctacacgccacgcctcagatatgattacctttttatacattttctcacactc |
31424946 |
T |
|
| Q |
301 |
ttctctcaaacaacctcggtcgcagtggagctcttccttcgtcgtatccggtcttcatcaacaccagcttcaagattgtgtcattctagttttgttccaa |
400 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31424945 |
ttctctcaaacaacctcggtcgcagcggagctcttccttcgtcgtatccggtcttcatcaacaccagcttcaagattgtgtcattctag-tttgttccaa |
31424847 |
T |
|
| Q |
401 |
tgaatgaatagacaactaaaaagttgtacacaaagtacaatagt |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31424846 |
tgaatgaatagacaactaaaaagttgtacacaaagtacaatagt |
31424803 |
T |
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