View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13964_low_6 (Length: 412)
Name: NF13964_low_6
Description: NF13964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13964_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 65 - 382
Target Start/End: Original strand, 7742956 - 7743273
Alignment:
| Q |
65 |
cttgaagagatggaaagaaggatacatgagagatatggaaagcagcggttggctgaagaatatgatgaagaaactacagatgtagaacaacaatcacttt |
164 |
Q |
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| T |
7742956 |
cttgaagagatggaaagaaggatacatgagagatatggaaagcagcggttggctgaagaatatgatgaagaaactacagatgtagaacaacaatcacttt |
7743055 |
T |
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| Q |
165 |
tgccatctgttagagacccaaagctctggatggtcaaatgtgtgattggccgtgagcgtgaatccgctgtttgcctcatgcaaaagtacataaacaaggg |
264 |
Q |
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| T |
7743056 |
tgccatctgttagagacccaaagctctggatggtcaaatgtgtgattggccgtgagcgtgaatccgctgtttgcctcatgcaaaagtacataaacaaggg |
7743155 |
T |
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| Q |
265 |
gtcagacttgcaaatcagatcagctattgctcttgatcatctcaaaaactatatatatgtcgaagcagataaagaagctcatgttagagaggtattgtat |
364 |
Q |
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| T |
7743156 |
gtcagacttgcaaatcagatcagctattgctcttgatcatctcaaaaactatatatatgtcgaagcagataaagaagctcatgttagagaggtattgtat |
7743255 |
T |
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| Q |
365 |
tgtgtcaaatatctactg |
382 |
Q |
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| T |
7743256 |
tgtgtcaaatatctactg |
7743273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 208 - 362
Target Start/End: Original strand, 40864778 - 40864932
Alignment:
| Q |
208 |
gattggccgtgagcgtgaatccgctgtttgcctcatgcaaaagtacataaacaaggggtcagacttgcaaatcagatcagctattgctcttgatcatctc |
307 |
Q |
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| T |
40864778 |
gattggccgtgagcgtgaaacagctgtttgcctcatgcaaaagtacatagataaggggtcagaattgcaaatcagatcagctattgctcttgatcatctc |
40864877 |
T |
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| Q |
308 |
aaaaactatatatatgtcgaagcagataaagaagctcatgttagagaggtattgt |
362 |
Q |
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| T |
40864878 |
aaaaactacatatatgtggaagcagataaagaagctcatgttagagaggtattgt |
40864932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 40864483 - 40864635
Alignment:
| Q |
49 |
agaagatcatgaagaccttgaagagatggaaagaaggatacatgagagatatggaaagcagcggttggctgaagaatatgatgaagaaactacagatgta |
148 |
Q |
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| T |
40864483 |
agaagatcatgaagaccttgaagagatggcaagaaggatacaagagagatatggaaagcagcggttggc---agaatacgatgaagaaactacagatgta |
40864579 |
T |
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| Q |
149 |
gaacaacaatcacttttgccatctgttagagacccaaagctctggatggtcaaatg |
204 |
Q |
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| T |
40864580 |
gaacagcaagcacttttgccatctgtgagagacccaaagctgtggatggtcaaatg |
40864635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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