View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_high_12 (Length: 295)
Name: NF13965_high_12
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 32391074 - 32390833
Alignment:
| Q |
2 |
taattctcgttcaagcggtgtgtcagaatttcgtgtcatagtttcacatattagaaatatgctaaaaaattaactatgcaaacataaaaactacctaagc |
101 |
Q |
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| T |
32391074 |
taattctcgttcaagtggtgtgtcagaattttgtgtcatagtttcaaatattagaaatatgctaaaaaattaactatgtaaacataaaaactacctaaac |
32390975 |
T |
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| Q |
102 |
agaaggattagctacttggataattgtctacctagataaaattcataagcaataaatatgaacgaaattcaacaaagagatttcagaaaaattccaagag |
201 |
Q |
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| T |
32390974 |
agaaggattagctacttggataattgtctacctagataaaattcataagcaataaatatgaacgaaattcaacaaagagatttcagaaaaattccaagag |
32390875 |
T |
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| Q |
202 |
ttgaatgaaagaattaccttaagtttatcatcaacgaaatcca |
244 |
Q |
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| T |
32390874 |
tagaatgaaagaattacctt-agttaatcatgaacgaaatcca |
32390833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 26160537 - 26160495
Alignment:
| Q |
86 |
taaaaactacctaagcagaaggattagctacttggataattgt |
128 |
Q |
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| T |
26160537 |
taaaaactatctaagcagaaggattagcaacttggatgattgt |
26160495 |
T |
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