View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13965_high_13 (Length: 266)
Name: NF13965_high_13
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 5469594 - 5469354
Alignment:
| Q |
9 |
gagatgaaagttgtaacttaaatagcatattatataataacttgtaaacaaccattgtttaagttccttcaatctacagaagcaaaatataaccaagaac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5469594 |
gagatgaaagttgtaacttaaatagcatattatataataacttgtaaacaaccattgtttaagttccttcaatctacagaagcaaaatataaccaagaac |
5469495 |
T |
|
| Q |
109 |
gattacaaagttcaaacaaaagataccacatactacggcatcagttcctttccgatccaaacctgcgctttagacgcgttaaattaaccgccatgaaaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
5469494 |
gattacaaagttcaaacaaaagataccacatactaccgcatcagttcctttccgatccaaacctgcgctttagatgcattaaattaaccgccatgaaaac |
5469395 |
T |
|
| Q |
209 |
cagaagtttatctc--gtgtcatacatgaaattgaaatacg |
247 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
5469394 |
cagaactttatctcttgtgtcatacatgaaattgaaatacg |
5469354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 5492224 - 5492119
Alignment:
| Q |
142 |
tacggcatcagttcctttccgatccaaacctgcgctttagacgcgttaaattaaccgccatgaaaaccagaagtttatctc--gtgtcatacatgaaatt |
239 |
Q |
| |
|
||||| || |||| |||||| |||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||| | ||||| |
|
|
| T |
5492224 |
tacggtattagttgctttccaatccaaacttgcgctttagacgcggtaaattaattgccatcaaaaccagaagtttatctcttgtgtcatatacaaaatt |
5492125 |
T |
|
| Q |
240 |
gaaata |
245 |
Q |
| |
|
|||||| |
|
|
| T |
5492124 |
gaaata |
5492119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 5479110 - 5479037
Alignment:
| Q |
149 |
tcagttcctttccgatccaaacctgcgctttagacgcgttaaattaaccgccatgaaaaccagaagtttatctc |
222 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| ||||| ||||||||| |||| || |||| ||||||||||| |
|
|
| T |
5479110 |
tcagttcctttccaatccaaacctacgctttacacgcgccaaattaaccaccatcaagaccataagtttatctc |
5479037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 5503035 - 5502958
Alignment:
| Q |
145 |
ggcatcagttcctttccgatccaaacctgcgctttagacgcgttaaattaaccgccatgaaaaccagaagtttatctc |
222 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| | ||| ||||| ||||| |||| |||||||||||||| |
|
|
| T |
5503035 |
ggcatcagttcctttccaatccaaacacacgctttagacgtgctaagttaactgccatcaaaatcagaagtttatctc |
5502958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University