View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_high_5 (Length: 461)
Name: NF13965_high_5
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 34352349 - 34351899
Alignment:
| Q |
1 |
ccatgtattttgattgaacgattcattagccacaattaaatttatgaccggtggttgttctattgttcattctttgcatggtttgttgcaaaatattaga |
100 |
Q |
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| T |
34352349 |
ccatgtattttgattgaacgattcattagccacaattaaatttatgaccggtggttgttctattgttcattctttgcatggtttgttgcaaaatattaga |
34352250 |
T |
|
| Q |
101 |
gtcaacgcaacacacatgaagtctgtgaaattttcttgtgtttagagaggctaatcaagttatcgatgctttggcgaagattgattgatttatttcaacc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34352249 |
gtcatcgcaacacacatgaagtctgtgaaattttcttgtgtttagagaggctaatcaagttatcgacgctttggcgaagattgattgatttatttcaacc |
34352150 |
T |
|
| Q |
201 |
tactttgctagccgatagtgctagtaccctcttttctagaggtttttagnnnnnnnnnnnnnnngggattttaatcccttttgttcaac-nnnnnnnnnn |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34352149 |
tactttgctagccgatagtgctagtaccttcttttctagaggtttttag----tttttttttttgggattttaatcccttttgttcaacaaaaaaaaaaa |
34352054 |
T |
|
| Q |
300 |
gagaacaccatcactgtaaagaagcaaacatgaaaacatactggttatgttattatgaatgatgaatcatggtaataagtgaaacgaatgatagtgttgc |
399 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34352053 |
gggaacaccatcactgtaaagaagcaaacatgaaaacatactggttatgttattatgaatgatgaatcatggtaataagtgaaacgaatgatagtgttgc |
34351954 |
T |
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| Q |
400 |
aaatgtggtagttaggctcaagttaacttttttcttctatgttttcttcttctca |
454 |
Q |
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| T |
34351953 |
aaatgtggtagttaggctcaagtcaacttttttcttctatgttttcttcttctca |
34351899 |
T |
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