View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_high_6 (Length: 427)
Name: NF13965_high_6
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 12753989 - 12753596
Alignment:
| Q |
17 |
tgcgaagaaagtctttggaggcagtctggttagcaaggtatgattgagaaatacattgtctgtctcctttttgattcagaatgacatgtttgctaacg-t |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12753989 |
tgcgaagaaagtctttggaggcagtctggttagcaaggtatgattgagaaatacattgtctgtctcctttttgattcagaatgacatgtttgctaacggt |
12753890 |
T |
|
| Q |
116 |
tgtattttccttgtatttatgtttcagcttcggtgttgtaactgtagccgctcttccgtcaccaatgagccgttgattgacctgagtctagaaatagaaa |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12753889 |
tgtattttccttgtatttatgtttcagcttcggtgttgtaactgtagccgctcttccatcactaatgagccgttgattgacctgagtctagaaatagaaa |
12753790 |
T |
|
| Q |
216 |
atgtagattctctttcaagtgcattggagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtgga |
315 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12753789 |
atgtagattctatttcaagtgcattggagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtgga |
12753690 |
T |
|
| Q |
316 |
gaaacagcttatgttggatcagacaccttcaattgctgcattccatttaaagaggtttaagacagttgggaataattcagttgaaaagattgac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12753689 |
gaaacagcttatgttggatcagacaccttcaattgctgcattccatttaaagaggtttaagacagttgggaataatgcagttgaaaagattgac |
12753596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 12816949 - 12816556
Alignment:
| Q |
17 |
tgcgaagaaagtctttggaggcagtctggttagcaaggtatgattgagaaatacattgtctgtctcctttttgattcagaatgacatgtttgctaacg-t |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12816949 |
tgcgaagaaagtctttggaggcagtctggttagcaaggtatgattgagaaatacattgtctgtctcctttttgattcagaatgacatgtttgctaacggt |
12816850 |
T |
|
| Q |
116 |
tgtattttccttgtatttatgtttcagcttcggtgttgtaactgtagccgctcttccgtcaccaatgagccgttgattgacctgagtctagaaatagaaa |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
12816849 |
tgtattttccttgtatttatgtttcagcttcggtgttgtaactgtagccgctcttccatcactaatgagcagttgattgacctgagtctagaaatagaaa |
12816750 |
T |
|
| Q |
216 |
atgtagattctctttcaagtgcattggagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtgga |
315 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12816749 |
atgtagattctatttcaagtgcattggagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtgga |
12816650 |
T |
|
| Q |
316 |
gaaacagcttatgttggatcagacaccttcaattgctgcattccatttaaagaggtttaagacagttgggaataattcagttgaaaagattgac |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12816649 |
gaaacagcttatgttggatcagacaccttcaattgctgcattccatttaaagaggtttaagacagttgggaataatgcagttgaaaagattgac |
12816556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 142 - 379
Target Start/End: Original strand, 7778269 - 7778506
Alignment:
| Q |
142 |
gcttcggtgttgtaactgtagccgctcttccgtcaccaatgagccgttgattgacctgagtctagaaatagaaaatgtagattctctttcaagtgcattg |
241 |
Q |
| |
|
||||||||||||||||||| | || ||||||| ||| |||||||| | |||||| ||||||||||||||||||||| |||| ||||||||||||| || |
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| T |
7778269 |
gcttcggtgttgtaactgtggtcgatcttccgacactaatgagccatcgattgatttgagtctagaaatagaaaatgcagatactctttcaagtgcttta |
7778368 |
T |
|
| Q |
242 |
gagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagcttatgttggatcagacac |
341 |
Q |
| |
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|| |||||||||| ||| ||| | |||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
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| T |
7778369 |
gattctttcacaacggtagaagatattgatgcaaagtttaaatgtgagggctgcaatgaagaagtttctatggagaaacagcttatgttagatcagacac |
7778468 |
T |
|
| Q |
342 |
cttcaattgctgcattccatttaaagaggtttaagaca |
379 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
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| T |
7778469 |
cttcaattgctgcgttccatttaaagaggtttaagaca |
7778506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 142 - 385
Target Start/End: Original strand, 7767299 - 7767542
Alignment:
| Q |
142 |
gcttcggtgttgtaactgtagccgctcttccgtcaccaatgagccgttgattgacctgagtctagaaatagaaaatgtagattctctttcaagtgcattg |
241 |
Q |
| |
|
|||||||||||| |||||| | |||||||| | ||| ||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||| || |
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| T |
7767299 |
gcttcggtgttgcaactgtggtcgctcttctgacactaatgaaccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgcttta |
7767398 |
T |
|
| Q |
242 |
gagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagcttatgttggatcagacac |
341 |
Q |
| |
|
|| |||||||| | ||||||| | |||||||| ||| ||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
7767399 |
gattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaacagcttatgttggatcagacac |
7767498 |
T |
|
| Q |
342 |
cttcaattgctgcattccatttaaagaggtttaagacagttggg |
385 |
Q |
| |
|
|||| |||||||| ||||| || |||||||||||||||| |||| |
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|
| T |
7767499 |
cttcgattgctgccttccacttgaagaggtttaagacagatggg |
7767542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 142 - 385
Target Start/End: Original strand, 7773434 - 7773677
Alignment:
| Q |
142 |
gcttcggtgttgtaactgtagccgctcttccgtcaccaatgagccgttgattgacctgagtctagaaatagaaaatgtagattctctttcaagtgcattg |
241 |
Q |
| |
|
||||||||||||||||||| | | ||||| | || |||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||| || |
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| T |
7773434 |
gcttcggtgttgtaactgtggttgttcttctgacattaatgagccattgattgattttagtctagaaatagaaaatgtagatactctttcaagtgcttta |
7773533 |
T |
|
| Q |
242 |
gagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagcttatgttggatcagacac |
341 |
Q |
| |
|
|| |||||||| ||||||||| ||||||| || ||| ||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
7773534 |
gaatctttcactatggtggaacacattgacgcgaagtttaaatgcgagggctgcaacgaagaagtgtctatggagaaacaacttatgttggatcagacac |
7773633 |
T |
|
| Q |
342 |
cttcaattgctgcattccatttaaagaggtttaagacagttggg |
385 |
Q |
| |
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|||| |||||||| ||||| || |||||||||||||||| |||| |
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| T |
7773634 |
cttcgattgctgccttccacttgaagaggtttaagacagatggg |
7773677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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