View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13965_high_7 (Length: 403)

Name: NF13965_high_7
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13965_high_7
NF13965_high_7
[»] chr1 (8 HSPs)
chr1 (19-335)||(41453458-41453772)
chr1 (228-397)||(41426407-41426576)
chr1 (228-387)||(41431800-41431959)
chr1 (228-397)||(41442407-41442576)
chr1 (295-388)||(41448905-41448999)
chr1 (254-333)||(52472986-52473066)
chr1 (45-142)||(41426235-41426332)
chr1 (228-334)||(7238212-7238327)
[»] scaffold0648 (2 HSPs)
scaffold0648 (228-397)||(5895-6064)
scaffold0648 (45-167)||(5718-5840)
[»] scaffold0274 (2 HSPs)
scaffold0274 (228-397)||(17394-17563)
scaffold0274 (45-167)||(17618-17740)
[»] chr2 (4 HSPs)
chr2 (230-397)||(33370088-33370257)
chr2 (232-397)||(33363748-33363913)
chr2 (228-383)||(5839238-5839393)
chr2 (50-167)||(33363425-33363542)
[»] chr7 (2 HSPs)
chr7 (228-387)||(7762943-7763102)
chr7 (102-167)||(7763157-7763222)
[»] chr8 (1 HSPs)
chr8 (234-389)||(21223810-21223965)
[»] chr4 (1 HSPs)
chr4 (260-394)||(1004661-1004795)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 41453458 - 41453772
Alignment:
Q  19 tagttcccgtcttatcgaaacggttttggcatgttttctttataatacttcctttttgaaagatttccaaatttttcctcgttggtgtccactcgacata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  41453458 tagttcccgtcttatcgaaacggttttggcatgttttctttataatacttcctttttgaaagatttccaaatttttcctcgttagtgtccactc-acata 41453556  T
Q  119 tttgttatgaaattgggatcaagaacttttaattaccatagtgtgaaacatgattatggtatatttctcaatcttatcttcttcnnnnnnnnnnnnnnnn 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  41453557 tttgttatgaaattgggatcaagaacttttaattaccatagtgtgaaacatgattatggtatatttctcaatcttatcttctt-tttttttttttgactt 41453655  T
Q  219 nnnnnaatactcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccat 318  Q
         ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41453656 tttttaatgctcatcagatacaatatttgtgagagtctatgaatcaaggatggatctcttgagggctgtgattattggagcagaagagactccttaccat 41453755  T
Q  319 gacggtcttttcttttt 335  Q
    ||||||||||| |||||    
T  41453756 gacggtcttttattttt 41453772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 228 - 397
Target Start/End: Original strand, 41426407 - 41426576
Alignment:
Q  228 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 327  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  41426407 ctcatcagatacaatatttgtgagagtctgtgaatcaaggatggatctcatgagggctgtgattattggagcaaaagggactccttaccatgacagtctt 41426506  T
Q  328 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaataattta 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41426507 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatacttta 41426576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 228 - 387
Target Start/End: Original strand, 41431800 - 41431959
Alignment:
Q  228 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 327  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41431800 ctcatcagatacaatatttgtgagagtcttcgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtctt 41431899  T
Q  328 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttga 387  Q
    |||||||||||||||||||| ||||||  ||||||||||| |||||||||| ||||||||    
T  41431900 ttcttttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttga 41431959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 228 - 397
Target Start/End: Original strand, 41442407 - 41442576
Alignment:
Q  228 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 327  Q
    ||||||| ||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41442407 ctcatcaaatacaatatttgtgagagtctgcgaatcaaggatggatctcttgagagctgtgattattggagcagaagggactccttaccatgacggtctt 41442506  T
Q  328 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaataattta 397  Q
    ||||||||||||||  |||||||  |||| |||||||||| |||||||||| |||||| |||||| ||||    
T  41442507 ttcttttttgatgtacactttccaactggctatcccaatgtacccccggtacgtggttaagaatacttta 41442576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 295 - 388
Target Start/End: Original strand, 41448905 - 41448999
Alignment:
Q  295 ggagcagaagggactccttaccatgacggtcttttcttttttgatgtttacttt-ccccctggatatcccaatgaacccccggtatgtggttgag 388  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  41448905 ggagcagaagagactccttaccataacggtcttttcttttttgatgtttactttcccccctggatatcccaatgtacccccagtatgtggttgag 41448999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 52472986 - 52473066
Alignment:
Q  254 tttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactcctta-ccatgacggtcttttcttt 333  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| | |||||||||||| ||||    
T  52472986 tttatgaatcaaggatggatctcttgagggctgtaattattggagcagatggaactccttatcaatgacggtctttacttt 52473066  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 41426235 - 41426332
Alignment:
Q  45 tggcatgttttctttataatacttcctttttgaaagatttccaaatttttcctcgttggtgtccactcgacatatttgttatgaaattgggatcaaga 142  Q
    |||| ||| ||||||||||||| ||||| |||||| ||| ||||||||||||| | |||||||||||| | ||||||||| | || |||| |||||||    
T  41426235 tggcttgtcttctttataatacatccttgttgaaatattcccaaatttttccttggtggtgtccactccatatatttgttctaaagttggaatcaaga 41426332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 334
Target Start/End: Complemental strand, 7238327 - 7238212
Alignment:
Q  228 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagca---------gaagggactccttaccat 318  Q
    ||||| |||| ||||||||||  ||||||||||||||| |||| || ||  | ||||||| | ||||||||||         ||||||||| ||||||||    
T  7238327 ctcattagattcaatatttgttcgagtttatgaatcaatgatgaatgtcacgcgggctgtaactattggagcacaagggagtgaagggacttcttaccat 7238228  T
Q  319 gacggtcttttctttt 334  Q
    ||||||||||||||||    
T  7238227 gacggtcttttctttt 7238212  T

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Target: scaffold0648 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 228 - 397
Target Start/End: Original strand, 5895 - 6064
Alignment:
Q  228 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 327  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5895 ctcatcagatacaatatttgtgagagtctgtgaatcaagaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtctt 5994  T
Q  328 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaataattta 397  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  5995 ttcttttttgatgtttactttccccctgaatatcccaatgaacccccggtatgtggttgagaatacttta 6064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 5718 - 5840
Alignment:
Q  45 tggcatgttttctttataatacttcctttttgaaagatttccaaatttttcctcgttggtgtccactcgacatatttgttatgaaattgggatcaagaac 144  Q
    |||| ||||||||||||||||| ||||| |||||| ||| ||||||||||||| | |||||||||||| | ||||||||| | || || | |||||||||    
T  5718 tggcttgttttctttataatacatccttgttgaaatattcccaaatttttccttggtggtgtccactccatatatttgttctaaagtttgaatcaagaac 5817  T
Q  145 ttttaattaccatagtgtgaaac 167  Q
    || ||| ||||| | ||||||||    
T  5818 ttataaataccaaaatgtgaaac 5840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 228 - 397
Target Start/End: Complemental strand, 17563 - 17394
Alignment:
Q  228 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 327  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17563 ctcatcagatacaatatttgtgagagtctgtgaatcaagaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtctt 17464  T
Q  328 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaataattta 397  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  17463 ttcttttttgatgtttactttccccctgaatatcccaatgaacccccggtatgtggttgagaatacttta 17394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 17740 - 17618
Alignment:
Q  45 tggcatgttttctttataatacttcctttttgaaagatttccaaatttttcctcgttggtgtccactcgacatatttgttatgaaattgggatcaagaac 144  Q
    |||| ||||||||||||||||| ||||| |||||| ||| ||||||||||||| | |||||||||||| | ||||||||| | || || | |||||||||    
T  17740 tggcttgttttctttataatacatccttgttgaaatattcccaaatttttccttggtggtgtccactccatatatttgttctaaagtttgaatcaagaac 17641  T
Q  145 ttttaattaccatagtgtgaaac 167  Q
    || ||| ||||| | ||||||||    
T  17640 ttataaataccaaaatgtgaaac 17618  T

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Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 230 - 397
Target Start/End: Original strand, 33370088 - 33370257
Alignment:
Q  230 catcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctttt 329  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33370088 catcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtctttt 33370187  T
Q  330 cttttttgatgtttactttccccctggatatcccaatgaa--cccccggtatgtggttgagaataattta 397  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| ||| ||||    
T  33370188 cttttttgatgtttactttccccctggatatcccaatggacccccccggtatgtggttgaggatacttta 33370257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 232 - 397
Target Start/End: Original strand, 33363748 - 33363913
Alignment:
Q  232 tcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtcttttct 331  Q
    ||||||||||||||||||||| | |  |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33363748 tcagatacaatatttgtgagaatcttcgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatgatggtcttttct 33363847  T
Q  332 tttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaataattta 397  Q
    |||||||||||||||| ||||||  ||||||||||| |||||||||| ||||||||||||| ||||    
T  33363848 tttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgagaatacttta 33363913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 228 - 383
Target Start/End: Complemental strand, 5839393 - 5839238
Alignment:
Q  228 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 327  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  5839393 ctcatcagattcaatatttgttcgagtttatgaatcaagaatggatctcatgagggctgtaattattggagcagacgggactccttaccatgacggtctt 5839294  T
Q  328 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtgg 383  Q
    |||||||| ||| ||||||| ||   ||| | |||||||| ||| |||||||||||    
T  5839293 ttctttttcgatctttacttacctggtggctttcccaatgtaccgccggtatgtgg 5839238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 33363425 - 33363542
Alignment:
Q  50 tgttttctttataatacttcctttttgaaagatttccaaatttttcctcgttggtgtccactcgacatatttgttatgaaattgggatcaagaactttta 149  Q
    ||||||||| || |||  ||||| |||||||||| |||||| |||||||| ||| |||||| | | ||||||||| ||||||||| ||||||||||| ||    
T  33363425 tgttttcttcatgatatatccttgttgaaagattgccaaatatttcctcggtggcgtccacaccatatatttgttctgaaattggaatcaagaacttata 33363524  T
Q  150 attaccatagtgtgaaac 167  Q
    | | ||||| ||| ||||    
T  33363525 aatgccataatgtcaaac 33363542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 228 - 387
Target Start/End: Complemental strand, 7763102 - 7762943
Alignment:
Q  228 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 327  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  7763102 ctcatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcacaagggactccttaccatgatggtctt 7763003  T
Q  328 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttga 387  Q
    |||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||||    
T  7763002 ttcttttttgatttatactttccccctgaatatcccgatgaacccccggtacgtggttga 7762943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 7763222 - 7763157
Alignment:
Q  102 ggtgtccactcgacatatttgttatgaaattgggatcaagaacttttaattaccatagtgtgaaac 167  Q
    ||||||||||| | ||||||||| ||||||||| ||||||||| | ||| ||||||| ||||||||    
T  7763222 ggtgtccactccatatatttgttctgaaattggaatcaagaacatataaataccataatgtgaaac 7763157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 234 - 389
Target Start/End: Complemental strand, 21223965 - 21223810
Alignment:
Q  234 agatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttt 333  Q
    |||| |||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||| || || ||||| ||||| || || ||||||    
T  21223965 agattcaatatttgtcagagtttatgaatcaagaatagatctgttgagggctgtgattattggagcagagggaaccccttatcatgatggcctattcttt 21223866  T
Q  334 tttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgaga 389  Q
    |||||| ||| |||||||  ||| | |||||||| ||| ||||||||  |||||||    
T  21223865 tttgattttttctttcccagtggctttcccaatgtacctccggtatgctgttgaga 21223810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 394
Target Start/End: Original strand, 1004661 - 1004795
Alignment:
Q  260 aatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgtttactttccccctggata 359  Q
    |||||| |||| |||| ||||||||||| ||||||||| || ||||||||||||||||  |||||||||||||||||||| ||||||| ||   |   ||    
T  1004661 aatcaaagatgaatctgttgagggctgtaattattggaccaaaagggactccttaccagcacggtcttttcttttttgatttttacttccctagtaacta 1004760  T
Q  360 tcccaatgaacccccggtatgtggttgagaataat 394  Q
    ||||| || ||||||||||||| |||||| |||||    
T  1004761 tcccattgtacccccggtatgtcgttgaggataat 1004795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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