View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_high_9 (Length: 366)
Name: NF13965_high_9
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 37666566 - 37666903
Alignment:
| Q |
13 |
atgaaaatgaaaattacccatcnnnnnnngtattaaattatcaatattaattaattaatgatatttgtgttttaattactagtatagttttaggtgtcct |
112 |
Q |
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| T |
37666566 |
atgaaaatgaaaattacccatctttttttgtattaaattatcaatattaattaattaatgatatttgtgttttaattactagtatagttttaggtgtcct |
37666665 |
T |
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| Q |
113 |
atgtggttaatgcgacgtttgcgtcagcattgattgtatacaagtttgatgatagtacgtagtacatttgtacaaagtttgttatagacctgaattccta |
212 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37666666 |
atgtggttaatccgacgtttgcgtcagcattgattgtatacaagtttgatgatagtacgtagtacatttgtacaaagtttgttatagacctgaattccta |
37666765 |
T |
|
| Q |
213 |
tgttatgctagctgcatctatattttcagaaaccttcatctactgcatttgtgtgattaaatttatgataggaaatgtgatgactagattttttaattgt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37666766 |
tgttatgctagctgcatctatattttcagaaaccttcatctactgcatttgtgtgattaaatttatgataggaaatgtgatgactagatcttttaattgt |
37666865 |
T |
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| Q |
313 |
aatttctttgcgatttacgatgattatttgctaatttt |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
37666866 |
aatttctttgcgatttacgatgattatttgctaatttt |
37666903 |
T |
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