View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_low_1 (Length: 776)
Name: NF13965_low_1
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 661; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 19 - 761
Target Start/End: Complemental strand, 31945399 - 31944658
Alignment:
| Q |
19 |
gcgccatccctccagcgacgctcgtggagttcacattaaacggtgctaatggactagatttctacgatgtaagcctagtcgacggttacaaccttcccat |
118 |
Q |
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| T |
31945399 |
gcgccatccctccagcgacgctcgcggagttcacattaaacggtgctaatggactagatttctacgacgtcagcctagtcgacggttacaaccttcccat |
31945300 |
T |
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| Q |
119 |
aacagtggaaccaagtggcggcggtggaaactgcacgaccacgggctgtttagtggacttaaacggcgcgtgtccgacagaactaaaggtgaaaattgcg |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31945299 |
aacagtggaaccaagtggcggcagtggaaactgcacgactacgggctgtttagtagacttaaatggcgcgtgtccgacagaactaaaggtgaaaattgcg |
31945200 |
T |
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| Q |
219 |
gcggaaggtgaagggagtgatgaaaagagcgtggcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactc |
318 |
Q |
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| T |
31945199 |
gcggaagaagaagggagtgatgaaaagagcgtggcatgtaaaagcgcgtgcgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactc |
31945100 |
T |
|
| Q |
319 |
cgcagacttgtaagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacctg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31945099 |
cgcagacttgtaagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacttg |
31945000 |
T |
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| Q |
419 |
ttcctctgcagattacctcattactttctgttctacacattccaaagggtattgtattgtagttcaatcttctgattttttgttttaagtagaaaatnnn |
518 |
Q |
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| T |
31944999 |
ttcctctgcagattacctcattactttctgttctacacattccaaagggtattgtattgtagttcaatcttctgattttttgttttaagtagaaaat-aa |
31944901 |
T |
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| Q |
519 |
nnnntaactagaaatgtatttgagtgcatgcagttcgatcaagtcagggaccggaaaactcccgtttggagtggacatttgggcaggacaagcccatggc |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31944900 |
aaaataactagaaatgtatttgagtgcatgcagttcgatcaagtcagggaccggaaaactcccgtttggagtggacatttgggcaggacacgcccatggc |
31944801 |
T |
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| Q |
619 |
catgctgataagtcaaccaaggggatgtctctagttgtggcagcagttttcatgacaatttggtggcagctcagttaggcgtgcggatttagattccatg |
718 |
Q |
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| T |
31944800 |
catgctgataagtcaaccaaggggatgtctctagttgtggcagcagttttcatgacaatttggtggcagctcagttaggcgtgcggatttaaattccatg |
31944701 |
T |
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| Q |
719 |
cagttattgattttgatcgtctagtagtttgtttgtttctgtg |
761 |
Q |
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| T |
31944700 |
cagttattgattttgatcgtctagtagtttgtttgtttctgtg |
31944658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 252 - 409
Target Start/End: Complemental strand, 14039453 - 14039296
Alignment:
| Q |
252 |
gcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagt |
351 |
Q |
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||||||||||||||||||||||| ||||| |||||| |||||||| | ||||||||| | |||| | || || ||||||||||||||||| |||| |
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| T |
14039453 |
gcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagt |
14039354 |
T |
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| Q |
352 |
tcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcac |
409 |
Q |
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| T |
14039353 |
ttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatgaaacaagcac |
14039296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 252 - 433
Target Start/End: Complemental strand, 18954424 - 18954243
Alignment:
| Q |
252 |
gcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagt |
351 |
Q |
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||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||| | ||||| | || || ||||||||||| ||||| || | |
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| T |
18954424 |
gcgtgtaaaagcgcgtgtgaagcgtttggagatctgcaatattgttgtaatggcgcttacgctactccagatacatgcaagccaagttcgtactcacaat |
18954325 |
T |
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| Q |
352 |
tcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacctgttcctctgcagatta |
433 |
Q |
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| T |
18954324 |
tctttaagagtgcatgtccacgtgcttatagttatgcttatgatgatggaacaagcactttcgcttgtgcttctgcagatta |
18954243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 239 - 433
Target Start/End: Original strand, 8798164 - 8798358
Alignment:
| Q |
239 |
tgaaaagagcgtggcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagt |
338 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||| |||||||||||| | ||| | || ||||| |||||| |
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| T |
8798164 |
tgaagagagcgtggcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagtggcgcttatggttccccggatacgtgtaaaccaagt |
8798263 |
T |
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| Q |
339 |
tcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacctgttcctctgcagatta |
433 |
Q |
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|| ||||||||||| || ||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||| | ||||| ||||| |
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| T |
8798264 |
tcctactcgcagttttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatggaactagcactttcacttgtgcttctgctgatta |
8798358 |
T |
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