View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_low_11 (Length: 327)
Name: NF13965_low_11
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 29135617 - 29135932
Alignment:
| Q |
1 |
ttcatttcatccaatcacaactcctcattctctctagctacttcaaaagagagtgtgtttttgtgtttgtgttgatcttggcattgagagtgagagtggt |
100 |
Q |
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| T |
29135617 |
ttcatttcatccaatcaaaactcctcattctctctagctacttcaaaaaagagtgtgtttttgtgtttgtgttgatcttggcattgagggtgagagtggt |
29135716 |
T |
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| Q |
101 |
ggaaggaaggaaggtgaaacaagtgtgaatactattactgtatgtcagtggaatattacagtggaatttactacggtgagcttgctaatcctttgcaatg |
200 |
Q |
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| T |
29135717 |
ggaaggaaggaaggtgaaacaagtgtgaatactattactgtatgtcagtggaatattacagtggaatttactacggtgagcttgctaatcctttgcaatg |
29135816 |
T |
|
| Q |
201 |
gccacagttgaggaaaaaacgacgcctatttgttgttccctccaaaacaagaacaaaactgctgcaagtgcaacctctcctaatgttcctcagcaaaaac |
300 |
Q |
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| T |
29135817 |
gccacagttgaggaaaaaacgacgcctatttgttgttccctccaaaacaagaacaaaactgctgcaagtgcaacctctcctaatgttcctcagcaaaaac |
29135916 |
T |
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| Q |
301 |
aacagctacctttcat |
316 |
Q |
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|||||||||||||||| |
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| T |
29135917 |
aacagctacctttcat |
29135932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 14294439 - 14294528
Alignment:
| Q |
138 |
ctgtatgtcagtggaatattacagtggaatttactacggtgagcttgctaatcctttgcaatggccacagttgaggaaaaaacgacgcct |
227 |
Q |
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| T |
14294439 |
ctgtatgtcagtggaatactacagtacagttttgtacggtgagcttgctaacccttcacaatggccacagctcaggaaaaaacgacgcct |
14294528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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