View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13965_low_12 (Length: 305)

Name: NF13965_low_12
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13965_low_12
NF13965_low_12
[»] chr1 (4 HSPs)
chr1 (7-288)||(47065405-47065686)
chr1 (124-287)||(47056323-47056477)
chr1 (38-122)||(47056494-47056578)
chr1 (33-94)||(24181435-24181496)
[»] chr5 (1 HSPs)
chr5 (36-216)||(22160708-22160903)
[»] chr6 (1 HSPs)
chr6 (34-216)||(20592291-20592488)
[»] chr2 (1 HSPs)
chr2 (34-122)||(817310-817398)
[»] chr4 (4 HSPs)
chr4 (50-123)||(34611547-34611620)
chr4 (38-101)||(30666308-30666371)
chr4 (127-214)||(34611441-34611528)
chr4 (124-212)||(30666208-30666296)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 288
Target Start/End: Complemental strand, 47065686 - 47065405
Alignment:
Q  7 taggttggatacaatgtatagcatagtttgattgtcacatataagtttcattgcctaaacgtctcctaattcgagctgttggagtaattgtcttaactac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47065686 taggttggatacaatgtatagcatagtttgattgtcacatataagtttcattgcctaaacgtctcctaattcgagctgttggagtaattgtcttaactac 47065587  T
Q  107 atgagttcacaagttgtatattctgcttctgcactagaccttgtaactacattctatttcttactccgcaatgagatctaatttcctccaataacgacac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47065586 atgagttcacaagttgtatattctgcttctgcactagaccttgtaactacattctatttcttactccgcaatgagatctaatttcctccaataacgacac 47065487  T
Q  207 aataccctgaaggctgaagtgggcctaatatctagttggtttacaaatgagcaatggttgcctatttacaggtgtgaaaagt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47065486 aataccctgaaggctgaagtgggcctaatatctagttggtttacaaatgagcaatggttgcctatttacaggtgtgaaaagt 47065405  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 287
Target Start/End: Complemental strand, 47056477 - 47056323
Alignment:
Q  124 atattctgcttctgcactagaccttgtaactacattctatttcttactccgcaatgagatctaatttcctccaataacgacacaataccctgaaggctga 223  Q
    |||||||||||||||||||||||||  |||||  ||||||||||||||||| || |||||| ||  |||| |||| | |||||||||| |||| |  |||    
T  47056477 atattctgcttctgcactagacctttcaactatgttctatttcttactccgtaacgagatcaaa--tccttcaatgaagacacaatactctgatg--tga 47056382  T
Q  224 agtgggcctaatatctagttggtttacaaatgagcaatggttgcctatttacaggtgtgaaaag 287  Q
    |      ||| ||||||||| |||||||||||||| ||||||  ||||||| || |||||||||    
T  47056381 a-----tctactatctagtttgtttacaaatgagccatggttatctatttatagatgtgaaaag 47056323  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 47056578 - 47056494
Alignment:
Q  38 ttgtcacatataagtttcattgcctaaacgtctcctaattcgagctgttggagtaattgtcttaactacatgagttcacaagttg 122  Q
    ||||||||||| ||||||| | |||  |||||||||||||  |||||| |||||| |||||||||  || |||||||||||||||    
T  47056578 ttgtcacatattagtttcaataccttgacgtctcctaattttagctgtaggagtatttgtcttaatcacgtgagttcacaagttg 47056494  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 24181435 - 24181496
Alignment:
Q  33 tttgattgtcacatataagtttcattgcctaaacgtctcctaattcgagctgttggagtaat 94  Q
    |||| ||||||||||| |||||||||||||  || |||||||||| ||| ||||||||||||    
T  24181435 tttggttgtcacatattagtttcattgccttgacatctcctaatttgagttgttggagtaat 24181496  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 216
Target Start/End: Original strand, 22160708 - 22160903
Alignment:
Q  36 gattgtcacatataagtttcattgcctaaacgtctcctaattcgagctgttggagtaattgtcttaactacatgagttcacaagttgt------------ 123  Q
    ||||||||||||| || ||||||||||  || ||||| |||| ||| |||||||||||||| |||| | || ||||||||||||||||                
T  22160708 gattgtcacatattagcttcattgccttgacatctccaaatttgagttgttggagtaattgccttagccacgtgagttcacaagttgttactgccatagc 22160807  T
Q  124 ---atattctgcttctgcactagaccttgtaactacattctatttcttactccgcaatgagatctaatttcctccaataacgacacaataccctga 216  Q
       |||||| |||||| |||||||||||| ||||| ||||| |||||| |||| | |||||||| |||| |||||||| | |||||||||||||||    
T  22160808 acgatattcggcttctacactagaccttgcaactatattctgtttcttgctcctccatgagatcaaattccctccaatgaggacacaataccctga 22160903  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 20592291 - 20592488
Alignment:
Q  34 ttgattgtcacatataagtttcattgcctaaacgtctcctaattcgagctgttggagtaattgtcttaactacatgagttcacaagttg----------- 122  Q
    ||||||||||||||| || ||||||||||  || |||||||||| ||| |||||||||||||| |||| | || ||| |||||||||||               
T  20592291 ttgattgtcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgccttagccacgtgaattcacaagttgatgctgccata 20592390  T
Q  123 ----tatattctgcttctgcactagaccttgtaactacattctatttcttactccgcaatgagatctaatttcctccaataacgacacaataccctga 216  Q
         |||||| ||||||||||||||||||| |||||  |||| |||||| |||| | |||||||| |||| | |||||| | |||||||||||||||    
T  20592391 gcacgatattcggcttctgcactagaccttgcaactatgttctgtttcttgctcctccatgagatcaaattccatccaatgaggacacaataccctga 20592488  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 817310 - 817398
Alignment:
Q  34 ttgattgtcacatataagtttcattgcctaaacgtctcctaattcgagctgttggagtaattgtcttaactacatgagttcacaagttg 122  Q
    ||||||||||||||| || ||||||||||  || |||||||||| ||| |||||||||||||| |||| | || ||| |||||||||||    
T  817310 ttgattgtcacatattagcttcattgccttgacatctcctaatttgagttgttggagtaattgccttagccacgtgaattcacaagttg 817398  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 34611620 - 34611547
Alignment:
Q  50 agtttcattgcctaaacgtctcctaattcgagctgttggagtaattgtcttaactacatgagttcacaagttgt 123  Q
    ||||||||| |||  ||||||||||||| ||| ||||||||||||||||||| | |  ||||||||||||||||    
T  34611620 agtttcattaccttgacgtctcctaatttgagttgttggagtaattgtcttagccatgtgagttcacaagttgt 34611547  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 30666371 - 30666308
Alignment:
Q  38 ttgtcacatataagtttcattgcctaaacgtctcctaattcgagctgttggagtaattgtctta 101  Q
    ||||||||||| || ||||||||||  || |||||||||| ||| |||||||||||||||||||    
T  30666371 ttgtcacatattagattcattgccttgacatctcctaatttgagatgttggagtaattgtctta 30666308  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 34611528 - 34611441
Alignment:
Q  127 ttctgcttctgcactagaccttgtaactacattctatttcttactccgcaatgagatctaatttcctccaataacgacacaataccct 214  Q
    ||||||||||||||||||||||| |||||  |||| |||||| ||| || |||||||| |||||  |||||| | ||||||| |||||    
T  34611528 ttctgcttctgcactagaccttgcaactatgttctgtttcttgctctgccatgagatcaaattttttccaatgaggacacaacaccct 34611441  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 30666296 - 30666208
Alignment:
Q  124 atattctgcttctgcactagaccttgtaactacattctatttcttactccgcaatgagatctaatttcctccaataacgacacaatacc 212  Q
    |||||| ||||| ||||||||||||| ||||   || | |||||| |||||| |||||||| |||| |||||||| | |||||||||||    
T  30666296 atattcagcttcagcactagaccttgcaactttgttttgtttcttgctccgccatgagatcaaattacctccaatgaggacacaatacc 30666208  T

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