View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13965_low_18 (Length: 242)
Name: NF13965_low_18
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 33043286 - 33043068
Alignment:
| Q |
16 |
caaaagcatgagcagcaaggacattggaacaagaacttcatttccaatccaaaaaatgctcagatcccaattttctgaacaaataatgcaaatgtacaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33043286 |
caaaagcatgagcagcaaggacattggaacaagaacttcatttccaatccaaaaaatgctcagatcccaattttctgaacaaataatgcaaatgtacaac |
33043187 |
T |
|
| Q |
116 |
ttttatgtgtcctcttcttatcttctttcttttccaaatagtttatgttatatatttaatttaattcactttgctatttacttttccatctaatatttct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33043186 |
ttttatgtgtcctcttcttatcttctttcttttctaaatagtttatgttatatatttaatttaattcactttgctatttacttttccatctaatatttct |
33043087 |
T |
|
| Q |
216 |
tttactaagctggatattc |
234 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33043086 |
tttactaagctggatattc |
33043068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University