View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_low_2 (Length: 614)
Name: NF13965_low_2
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 25 - 603
Target Start/End: Original strand, 36125105 - 36125683
Alignment:
| Q |
25 |
gataccgtagaaagaaagctgcagaaaaatcaatttggaatatggagaatgcacaatcacagtctcataacaccaacaccagtacagcttccactagtga |
124 |
Q |
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| T |
36125105 |
gataccgtagaaagaaagctgcagaaaaatcaatttggaatatggagaatgcacaatcacagtctcataacaccaacaccagtacagcttccacgagtga |
36125204 |
T |
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| Q |
125 |
ggccaaatcaattgtagttgaatccaagaaaaacaaagatgaagatttgaacttcgttacgaacgaaagggttgagtttgatttgcaggacttgttaagg |
224 |
Q |
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| T |
36125205 |
ggccaaatcaattgtagttgaatccaagaaaaacaaagatgaagatttgaacttcgttacgaacgaaagggttgagtttgatttgcaggacttgttaagg |
36125304 |
T |
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| Q |
225 |
gcctcagctgaggttttgggaagtggaagttttggatccacttacaaggctatggtattgacaggaccagttgttgtagtgaaaagatttaagcacatga |
324 |
Q |
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| T |
36125305 |
gcctcagcagaggttttgggaagtggaagttttggatccacttacaaggctatggtattgacaggaccagttgttgtagtgaaaagatttaagcacatga |
36125404 |
T |
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| Q |
325 |
acaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctagttgcattctattatggaaaaga |
424 |
Q |
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| T |
36125405 |
acaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctagttgcattctattatggaaaaga |
36125504 |
T |
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| Q |
425 |
tgagaagcttttgatacacgattttgcagaaaatggcagcttggcaagtcatcttcacggtatgatatacgtaacattaattcattttataatctatttc |
524 |
Q |
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| T |
36125505 |
tgagaagcttttgatacacgattttgcagaaaatggcagcttggcaagtcatcttcacggtatgatatgcgtaacattaattcattttataatctatttc |
36125604 |
T |
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| Q |
525 |
ataatattaaagaaacatcaaatgtaactagtaattttgattgtgattgtgcgaaattatgcctcatgtttatgatgat |
603 |
Q |
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| T |
36125605 |
ataatattaaagaaacatcaaatgtaactagtaattttgattgtgattgtgcaaaattatgcctcatgtttatgatgat |
36125683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 433
Target Start/End: Original strand, 42509247 - 42509377
Alignment:
| Q |
303 |
gtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctag |
402 |
Q |
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| T |
42509247 |
gtgaagaggtttaagcaaatgaacaatgtagggaaggaagagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttg |
42509346 |
T |
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| Q |
403 |
ttgcattctattatggaaaagatgagaagct |
433 |
Q |
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| T |
42509347 |
ttgcttactattatagaaaagaagagaagct |
42509377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 222 - 488
Target Start/End: Original strand, 1254857 - 1255123
Alignment:
| Q |
222 |
agggcctcagctgaggttttgggaagtggaagttttggatccacttacaaggctatggtattgacaggaccagttgttgtagtgaaaagatttaagcaca |
321 |
Q |
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| T |
1254857 |
agggcttcagctgaagtgcttggaagtggaagttttggatcaacttataaggcaatagttttgaatggaccaactgtggtggttaagagatttaggcaca |
1254956 |
T |
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| Q |
322 |
tgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctagttgcattctattatggaaa |
421 |
Q |
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| T |
1254957 |
tgaataatgttggtaaacaagagttttttgaacacatgaaaaagcttggaagtttgacacatcctaatctacttcctcttattgcattctactacaaaaa |
1255056 |
T |
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| Q |
422 |
agatgagaagcttttgatacacgattttgcagaaaatggcagcttggcaagtcatcttcacggtatg |
488 |
Q |
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| T |
1255057 |
agaagagaagtttttggtttatgattttggtgaaaatggaagcttggctagtcatctacatggtatg |
1255123 |
T |
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