View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_low_20 (Length: 224)
Name: NF13965_low_20
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 14073606 - 14073412
Alignment:
| Q |
19 |
aaaagaggtgtccaaattgttgtgctaccacaagaattactctataaatagttttaaaaacggtgacatgtattttgttatattaaaacnnnnnnnnngg |
118 |
Q |
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| T |
14073606 |
aaaagaggtgtccaaattgttgtgctaccacaagaattactctataaatagttttaaaaacggtcacatgtattttgttatattaaaacttttttat-gg |
14073508 |
T |
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| Q |
119 |
aagaaaattatattaaaactttataaagtcaaaacattagtaacgaaatcttcattgttttttaaaaataaagagaatccttaccatagaataatc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14073507 |
aagaaaattatattaaaactttataaagtcaaaacattagtaacgaaatcttcattgttttttaaaaataaagagaatccttaccatagaagaatc |
14073412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 14081081 - 14080889
Alignment:
| Q |
19 |
aaaagaggtgtccaaattgttgtgctaccacaagaattactctataaatagttttaaaaacggtgacatgtattttgttatattaaaacnnnnnnnnngg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
14081081 |
aaaagaggtgtccaaattgttgtgctaccacaagaattactctataaatagttttaaaaacggtcacatgtattttgttatattaaaactttttat--gg |
14080984 |
T |
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| Q |
119 |
aagaaaattatattaaaactttataaagtcaaaacattagtaacgaaatcttcattgttttttaaaaataaagagaatccttaccatagaataatc |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14080983 |
aagaaa-ttatattaaaactttataaagtcaaaacattagtaacgaaatcttcattgttttttaaaaataaagagaatccttaccatagaagaatc |
14080889 |
T |
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