View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13965_low_3 (Length: 612)
Name: NF13965_low_3
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 72 - 606
Target Start/End: Original strand, 20159427 - 20159966
Alignment:
| Q |
72 |
ttctaaatttgcttgcacaaatatctataatacaagtaactgaacgtctctgtaaaatttgtttataca--gtcagtagttaatctcaaatttggttagg |
169 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
20159427 |
ttctaaatttgcttgcacaaatatctatacaacaagtaactgaacgtctctgtaaaatttgtttatacacagtcagtagttaatctccaatttggttagg |
20159526 |
T |
|
| Q |
170 |
tttcatttcttatcatagcatttagggtgacaagtaacttaagcgatagacttacttgagatcgggcacattcacgaacagtaagaattctatcttgatc |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20159527 |
tttcatttcttatcatagcatttagggtgacaagtaacttaagcaatatacttacttgagatcgggcacattcacgaacagtaagaattctatcttgatc |
20159626 |
T |
|
| Q |
270 |
aggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccat |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20159627 |
aggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccat |
20159726 |
T |
|
| Q |
370 |
tggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagttttatctgtgcattatattcgacaacgttaa |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
20159727 |
tggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagctttatctgtgcattatattcgacaacgttaa |
20159826 |
T |
|
| Q |
470 |
ttagatt---aacnnnnnnnntgtcatgctaaaattcacaaagatttcagtttaccttttcatctggaagatcacgccaatcacaacctggcctcttggg |
566 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
20159827 |
ttagattaacaacacaaaaaatgtcatgctaaaattcacaaagatttcagtttaccttttcatctggaagatcgcgccaatcacaacctggtctcttggg |
20159926 |
T |
|
| Q |
567 |
aattttctgacatcgaatcaagttcaactcattcatctct |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20159927 |
aattttctgacatcgaatcaagttcaactcattcatctct |
20159966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 20159334 - 20159389
Alignment:
| Q |
72 |
ttctaaatttgcttgcacaaatatctataatacaagtaactgaacgtctctgtaaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
20159334 |
ttctaaatttgcttgcacaaatatctatacaacaagtaactgaacgtttctgtaaa |
20159389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 20159283 - 20159314
Alignment:
| Q |
18 |
aatgaattcaatagttttactattatgtcacg |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
20159283 |
aatgaattcaatagttttactattatgtcacg |
20159314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 146 - 605
Target Start/End: Original strand, 8047876 - 8048340
Alignment:
| Q |
146 |
tagttaatctcaaatttggttaggtttcatttcttatcatagcatttagggtgacaagtaacttaagcgatagacttacttgagatcgggcacattcacg |
245 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8047876 |
tagttaatttccaatttggttaggtttcatttcttatcaaagcatttagggtgacaagtaacttaagcgatagacttacttgagatcgggcacattcacg |
8047975 |
T |
|
| Q |
246 |
aacagtaagaattctatcttgatcaggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtcc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8047976 |
aacagtaagaattctatcttgatcaggatggaagcacattccaaccttccccattggctgagggtcagtgatggaagttggaaaatttccttgccagtcc |
8048075 |
T |
|
| Q |
346 |
aacctaccaaacagtcccttccattggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagttttatct |
445 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
8048076 |
aacctaccaaacagtcccttccattgattatgcctcttagcagtgttaggcaagcaccacggaatcaaatcaacaagttgtccacttgacagttttatct |
8048175 |
T |
|
| Q |
446 |
gtgcattatattcgacaacgttaattagatta-----acnnnnnnnntgtcatgctaaaattcacaaagatttcagtttaccttttcatctggaagatca |
540 |
Q |
| |
|
|| ||||||||| || ||| | |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8048176 |
gtacattatatttgataacatcaattagattaacagcacaaaaaaaatgtcatgctaaaattcacaaagatttcagtttaccttttcatctggaagatca |
8048275 |
T |
|
| Q |
541 |
cgccaatcacaacctggcctcttgggaattttctgacatcgaatcaagttcaactcattcatctc |
605 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
8048276 |
cgccaatcacaacctggtctcttgggaattttctgacaacgaatcaagttcaactcattcatctc |
8048340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 8047779 - 8047841
Alignment:
| Q |
80 |
ttgcttgcacaaatatctataatacaagtaactgaacgtctctgtaaaatttgtttatacagt |
142 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
8047779 |
ttgcttgcacaaatatctatacaacaagtgactgaacgtctctataaaatttgtttatacagt |
8047841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 158 - 605
Target Start/End: Original strand, 24276360 - 24276808
Alignment:
| Q |
158 |
aatttggttaggtttcatttcttatcatagcatttagggtgacaagtaacttaagcgatagacttacttgagatcgggcacattcacgaacagtaagaat |
257 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24276360 |
aatttggttaggtttcaattcttaagatagcatttagggtgacaagaaactaa-----tagacttacttgagatcgggcacattcacgaacagtaagaat |
24276454 |
T |
|
| Q |
258 |
tctatcttgatcaggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtccaacctaccaaac |
357 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24276455 |
tctatcttgatcagggtggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtccaacctaccaaac |
24276554 |
T |
|
| Q |
358 |
agtcccttccattggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagttttatctgtgcattatatt |
457 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24276555 |
agtcccttccattgattatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagttttatctgtgcattatatt |
24276654 |
T |
|
| Q |
458 |
cgacaacgttaattagatt------aacnnnnnnnntgtcatgctaaaattcacaaagatttcagtttaccttttcatctggaagatcacgccaatcaca |
551 |
Q |
| |
|
|| ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
24276655 |
tgataacattaattagattaacaacaacacaaagaatgtcatgctaaaattcacaaagatttcagtttaccttttcctctggaagatcacgccaatcaca |
24276754 |
T |
|
| Q |
552 |
acctggcctcttgggaattttctgacatcgaatcaagttcaactcattcatctc |
605 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24276755 |
acctggtctcttgggaattttctgacatcgaatcaagttcaactcattcatctc |
24276808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 161 - 605
Target Start/End: Complemental strand, 12042876 - 12042433
Alignment:
| Q |
161 |
ttggttaggtttcatttcttatcatagcatttagggtgacaagtaacttaagcgatagacttacttgagatcgggcacattcacgaacagtaagaattct |
260 |
Q |
| |
|
||||||||| |||||||||||| || |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12042876 |
ttggttagggttcatttcttatgatggcatttagggtgactagtaactaac-----agacttacttgagatcgggcacattcacgaacagtaagaattct |
12042782 |
T |
|
| Q |
261 |
atcttgatcaggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtccaacctaccaaacagt |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12042781 |
atcttgatcaggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagtaggaaagtttccttgccagtccaacctaccaaacagt |
12042682 |
T |
|
| Q |
361 |
cccttccattggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagttttatctgtgcattatattcga |
460 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
12042681 |
cccttccattgattatgcctcttagcagtgtttggcaagcaccacggtatcaaatcaacaagttgtccacttgacagccttatctgtgcattatatttga |
12042582 |
T |
|
| Q |
461 |
caacgttaattagattaac----nnnnnnnntgtcatgctaaaattcacaaagatttcagtttaccttttcatctggaagatcacgccaatcacaacctg |
556 |
Q |
| |
|
||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
12042581 |
taacattaattagattaacacgtacaaaaaatgtcatgctaaaaatcacaaagatttcagtttaccttttcatctggaagatcacgccaatcacagcctg |
12042482 |
T |
|
| Q |
557 |
gcctcttgggaattttctgacatcgaatcaagttcaactcattcatctc |
605 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12042481 |
gtctcttgggaattttctgacatcgaatcaaattcaactcattcatctc |
12042433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 12042972 - 12042913
Alignment:
| Q |
89 |
caaatatctataatacaagtaactgaacgtctctgtaaaatttgtttatacagtcagtag |
148 |
Q |
| |
|
|||||||||||| |||||| |||||| || |||||||||||| ||||||||| |||||| |
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|
| T |
12042972 |
caaatatctatacaacaagtgactgaatgtttctgtaaaatttatttatacagccagtag |
12042913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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