View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_low_4 (Length: 532)
Name: NF13965_low_4
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 7 - 517
Target Start/End: Original strand, 39604775 - 39605285
Alignment:
| Q |
7 |
gagatgaagtcatgaaacttttgatcagatatttttacaaaattcaatttcagcactaatatttctaggaaaagtgatgtcacaaaactaagtatttaaa |
106 |
Q |
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| T |
39604775 |
gagatgaagtcatgaaacttttgatcagatatttttacaaaattcaatttcagtactaatatttctaggaaaagtgatgtcacaaaacgaagtatttaaa |
39604874 |
T |
|
| Q |
107 |
ttgtagcaaacttagactcatttgcataagtgtatggtagagagtgaaaaatacatagaaggattgattcattttctggagaacatgtcgaaatccttag |
206 |
Q |
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| T |
39604875 |
ttgtagcaaacttagactcatttgcataagtgtatggtagagagtgaaaaatacatagaaggattgattcattttctggagaacatgtcgaaatccttag |
39604974 |
T |
|
| Q |
207 |
ccttaattactatcatgttggtgattattgcaacaattattgtccctacacattgtcaacatgtagattggagtcccacaaagacaacagtacgtatttc |
306 |
Q |
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| T |
39604975 |
ccttaattactatcatgttggtgattattgcaacaattattgtccctacacattgtcaacatgtagattggagtcccacaaagacaacagtacgtatttc |
39605074 |
T |
|
| Q |
307 |
aaatgatatgggcactgttgttgatgtgcattgtaaatcaaaagacgatgatcttggcagccatgatctttatcaaggtgaaattacagaatggtctttt |
406 |
Q |
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| T |
39605075 |
aaatgatatgggcactgttgttgatgtgcattgtaaatcaaaagacgatgatcttggcagccatgatctttatcaaggtgaaattacagaatggtctttt |
39605174 |
T |
|
| Q |
407 |
cgtgccaacattcgtggcaccactttgtattcgtgcgtccttaaatgggacagtgtgacaaagaacgtagtaatttatgatgctaagaaggatgaagatt |
506 |
Q |
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| T |
39605175 |
cgtgccaacattcgtggcaccactttgtattcgtgcgtccttaaatgggacagtgtgacaaagaacgtagtaatttatgatgctaagaaggatgaagatt |
39605274 |
T |
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| Q |
507 |
tatgtattacc |
517 |
Q |
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| T |
39605275 |
tgtgtattacc |
39605285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 517
Target Start/End: Original strand, 39610487 - 39611007
Alignment:
| Q |
7 |
gagatgaagtcatgaaacttttgatcagatatttttacaaaattcaatttcagcactaatatttctaggaaaagtgatgtcacaaaactaagtatttaaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
39610487 |
gagatgaagtcatgaaacttttgatcagatatttttacaaacttcaatttcaatagcaatatttctaggaaaagcgatgtcacaaaattaagtatttaaa |
39610586 |
T |
|
| Q |
107 |
ttgtagcaaacttagactcatttgcataagtgtatggtagagagtgaaaaatacatagaaggattgattcattttctggagaacatgtcgaaatccttag |
206 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||| |||||| |
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| T |
39610587 |
tcgtagcaaacttagactcatttgcataagtatatggtagagagtgaaaaatacatagaaggattggttcattttcacaaaaacatgttgaaacccttag |
39610686 |
T |
|
| Q |
207 |
ccttaattactatcatgttggtgattattgcaacaattattgtccctacacattgt---caacatgtagattggagtcccacaaagacaacagtacgtat |
303 |
Q |
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||| ||| ||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||||||| ||||||| |
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| T |
39610687 |
cctcaatcactatcatgttggtgattattgcaacaattacagtccctacacatggtcaacaacatgtagattgaagtcccacaaagacaacaatacgtat |
39610786 |
T |
|
| Q |
304 |
ttcaaatgatatgggc---actg----ttgttgatgtgcattgtaaatcaaaagacgatgatcttggcagccatgatctttatcaaggtgaaattacaga |
396 |
Q |
| |
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| || ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| || | |||||||| | |||| ||||||||| |
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| T |
39610787 |
tacagatgatatgggcaagattgttcattgttgatgtgcattgtaaatcaaaagacgatgatcttggcgaccgttatctttataatggtgcaattacaga |
39610886 |
T |
|
| Q |
397 |
atggtcttttcgtgccaacattcgtggcaccactttgtattcgtgcgtccttaaatgggacagtgtgacaaagaacgtagtaatttatgatgctaagaag |
496 |
Q |
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| T |
39610887 |
atggtcttttcttgctaacattcgtggcaccactttgtattcgtgcgtccttaaatgggacagtgtgacaaagaacgtagtaatttatgatgctaagaag |
39610986 |
T |
|
| Q |
497 |
gatgaagatttatgtattacc |
517 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
39610987 |
gatgaagatttgtgtattacc |
39611007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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