View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_low_5 (Length: 466)
Name: NF13965_low_5
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 72 - 462
Target Start/End: Original strand, 20159427 - 20159819
Alignment:
| Q |
72 |
ttctaaatttgcttgcacaaatatctataatacaagtaactgaacgtctctgtaaaatttgtttataca--gtcagtagttaatctcaaatttggttagg |
169 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
20159427 |
ttctaaatttgcttgcacaaatatctatacaacaagtaactgaacgtctctgtaaaatttgtttatacacagtcagtagttaatctccaatttggttagg |
20159526 |
T |
|
| Q |
170 |
tttcatttcttatcatagcatttagggtgacaagtaacttaagcgatagacttacttgagatcgggcacattcacgaacagtaagaattctatcttgatc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20159527 |
tttcatttcttatcatagcatttagggtgacaagtaacttaagcaatatacttacttgagatcgggcacattcacgaacagtaagaattctatcttgatc |
20159626 |
T |
|
| Q |
270 |
aggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccat |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20159627 |
aggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccat |
20159726 |
T |
|
| Q |
370 |
tggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagttttatctgtgcattttcttcgaca |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
20159727 |
tggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagctttatctgtgcattatattcgaca |
20159819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 20159334 - 20159389
Alignment:
| Q |
72 |
ttctaaatttgcttgcacaaatatctataatacaagtaactgaacgtctctgtaaa |
127 |
Q |
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| T |
20159334 |
ttctaaatttgcttgcacaaatatctatacaacaagtaactgaacgtttctgtaaa |
20159389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 20159283 - 20159314
Alignment:
| Q |
18 |
aatgaattcaatagttttactattatgtcacg |
49 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
20159283 |
aatgaattcaatagttttactattatgtcacg |
20159314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 146 - 452
Target Start/End: Original strand, 8047876 - 8048182
Alignment:
| Q |
146 |
tagttaatctcaaatttggttaggtttcatttcttatcatagcatttagggtgacaagtaacttaagcgatagacttacttgagatcgggcacattcacg |
245 |
Q |
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|||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8047876 |
tagttaatttccaatttggttaggtttcatttcttatcaaagcatttagggtgacaagtaacttaagcgatagacttacttgagatcgggcacattcacg |
8047975 |
T |
|
| Q |
246 |
aacagtaagaattctatcttgatcaggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtcc |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8047976 |
aacagtaagaattctatcttgatcaggatggaagcacattccaaccttccccattggctgagggtcagtgatggaagttggaaaatttccttgccagtcc |
8048075 |
T |
|
| Q |
346 |
aacctaccaaacagtcccttccattggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagttttatct |
445 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
8048076 |
aacctaccaaacagtcccttccattgattatgcctcttagcagtgttaggcaagcaccacggaatcaaatcaacaagttgtccacttgacagttttatct |
8048175 |
T |
|
| Q |
446 |
gtgcatt |
452 |
Q |
| |
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|| |||| |
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| T |
8048176 |
gtacatt |
8048182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 8047779 - 8047841
Alignment:
| Q |
80 |
ttgcttgcacaaatatctataatacaagtaactgaacgtctctgtaaaatttgtttatacagt |
142 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
8047779 |
ttgcttgcacaaatatctatacaacaagtgactgaacgtctctataaaatttgtttatacagt |
8047841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 158 - 452
Target Start/End: Original strand, 24276360 - 24276649
Alignment:
| Q |
158 |
aatttggttaggtttcatttcttatcatagcatttagggtgacaagtaacttaagcgatagacttacttgagatcgggcacattcacgaacagtaagaat |
257 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24276360 |
aatttggttaggtttcaattcttaagatagcatttagggtgacaagaaactaa-----tagacttacttgagatcgggcacattcacgaacagtaagaat |
24276454 |
T |
|
| Q |
258 |
tctatcttgatcaggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtccaacctaccaaac |
357 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24276455 |
tctatcttgatcagggtggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtccaacctaccaaac |
24276554 |
T |
|
| Q |
358 |
agtcccttccattggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagttttatctgtgcatt |
452 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24276555 |
agtcccttccattgattatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagttttatctgtgcatt |
24276649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 161 - 452
Target Start/End: Complemental strand, 12042876 - 12042590
Alignment:
| Q |
161 |
ttggttaggtttcatttcttatcatagcatttagggtgacaagtaacttaagcgatagacttacttgagatcgggcacattcacgaacagtaagaattct |
260 |
Q |
| |
|
||||||||| |||||||||||| || |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12042876 |
ttggttagggttcatttcttatgatggcatttagggtgactagtaactaac-----agacttacttgagatcgggcacattcacgaacagtaagaattct |
12042782 |
T |
|
| Q |
261 |
atcttgatcaggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagttggaaaatttccttgccagtccaacctaccaaacagt |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
12042781 |
atcttgatcaggatggaagcacattccaaccttccccattggttgagggtcagtgatggaagtaggaaagtttccttgccagtccaacctaccaaacagt |
12042682 |
T |
|
| Q |
361 |
cccttccattggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatcaacaagttgtccacttgacagttttatctgtgcatt |
452 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12042681 |
cccttccattgattatgcctcttagcagtgtttggcaagcaccacggtatcaaatcaacaagttgtccacttgacagccttatctgtgcatt |
12042590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 12042972 - 12042913
Alignment:
| Q |
89 |
caaatatctataatacaagtaactgaacgtctctgtaaaatttgtttatacagtcagtag |
148 |
Q |
| |
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|||||||||||| |||||| |||||| || |||||||||||| ||||||||| |||||| |
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|
| T |
12042972 |
caaatatctatacaacaagtgactgaatgtttctgtaaaatttatttatacagccagtag |
12042913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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