View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13965_low_9 (Length: 377)
Name: NF13965_low_9
Description: NF13965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13965_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 23237615 - 23237978
Alignment:
| Q |
1 |
ctgctattattcatacaatctggtgtatttggcttgagagatatagaaggtacttcacaggaaaacattcattcttccatgggctctttaatcaacctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |
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| T |
23237615 |
ctgctattattcatacaatctggtgtatttggcttgagagatatagaaggtacttcaccggaaaacatt----cttccatgggctctttaatcaacctaa |
23237710 |
T |
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| Q |
101 |
tcatcacagaagttaaattaagctttgatcgatctatctctagttgccagcactgctgctatgcctgatttcaagctctctcaactatttggtatcccta |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23237711 |
tcatcacagaagttaaattaagctttgatcgatatatctctagttgccagcactgctgctatgtctgatttcaagctctctcaactatttggtatcccta |
23237810 |
T |
|
| Q |
201 |
ttactcccaagaaagctaaagttcctcctattgtctgttggcttcctcccaaaccgggctgcatcaagataaactgtgatggctcctcctttggtagtac |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23237811 |
ttactccaaagaaagctaaagttcctcctattgtctgttggcttcctcccaaaccgggctgcatcaagataaactgtgatggctcctcctttggtagtac |
23237910 |
T |
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| Q |
301 |
tagtggatcaataggttttattctcagaaactctaatactgatttcatgggcgccttatgccagaata |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23237911 |
tagtggatcaataggttttattctcagaaactctaatactgatttcatgggcgccgtatgccagaata |
23237978 |
T |
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