View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13966_high_6 (Length: 227)

Name: NF13966_high_6
Description: NF13966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13966_high_6
NF13966_high_6
[»] chr6 (6 HSPs)
chr6 (30-227)||(17169708-17169905)
chr6 (41-101)||(20863393-20863453)
chr6 (35-114)||(6691543-6691621)
chr6 (53-124)||(32613150-32613221)
chr6 (7-35)||(17170014-17170042)
chr6 (41-113)||(34444809-34444881)
[»] chr7 (14 HSPs)
chr7 (52-119)||(5579243-5579310)
chr7 (52-119)||(31835192-31835259)
chr7 (35-120)||(38374591-38374676)
chr7 (59-119)||(5273606-5273666)
chr7 (52-119)||(7801180-7801247)
chr7 (53-103)||(18847433-18847482)
chr7 (44-114)||(20952150-20952220)
chr7 (41-119)||(22760863-22760941)
chr7 (41-119)||(26459408-26459486)
chr7 (65-119)||(48125196-48125250)
chr7 (52-101)||(3968651-3968700)
chr7 (66-119)||(48039670-48039723)
chr7 (41-89)||(9608627-9608675)
chr7 (41-89)||(9836199-9836247)
[»] chr8 (16 HSPs)
chr8 (52-119)||(26688865-26688932)
chr8 (52-119)||(23361658-23361725)
chr8 (35-119)||(6530807-6530890)
chr8 (68-120)||(22268958-22269010)
chr8 (36-114)||(3624585-3624663)
chr8 (67-121)||(5801045-5801099)
chr8 (41-103)||(7140725-7140787)
chr8 (41-122)||(16852337-16852418)
chr8 (31-112)||(28636331-28636412)
chr8 (31-112)||(28644065-28644146)
chr8 (31-112)||(28653017-28653098)
chr8 (45-94)||(34639337-34639385)
chr8 (43-119)||(6436555-6436631)
chr8 (53-121)||(18897164-18897232)
chr8 (41-121)||(19703485-19703565)
chr8 (59-103)||(35287732-35287776)
[»] chr1 (13 HSPs)
chr1 (53-101)||(17623580-17623628)
chr1 (35-119)||(19528319-19528403)
chr1 (65-119)||(15581163-15581217)
chr1 (41-125)||(33700771-33700855)
chr1 (52-120)||(37046984-37047051)
chr1 (43-98)||(19480548-19480602)
chr1 (52-98)||(4824992-4825038)
chr1 (65-123)||(39714800-39714858)
chr1 (41-114)||(20999290-20999361)
chr1 (51-120)||(41508830-41508899)
chr1 (35-120)||(51814493-51814578)
chr1 (41-89)||(15786318-15786366)
chr1 (35-103)||(31605840-31605908)
[»] chr4 (12 HSPs)
chr4 (65-120)||(29195094-29195149)
chr4 (52-119)||(38206135-38206201)
chr4 (53-120)||(51250532-51250599)
chr4 (41-114)||(37980146-37980218)
chr4 (35-102)||(46295114-46295181)
chr4 (41-124)||(56409946-56410028)
chr4 (41-119)||(37109349-37109427)
chr4 (65-103)||(39030135-39030173)
chr4 (65-122)||(21344814-21344871)
chr4 (42-119)||(31759657-31759734)
chr4 (30-95)||(32992636-32992701)
chr4 (43-99)||(38869788-38869844)
[»] chr3 (21 HSPs)
chr3 (52-119)||(3054994-3055061)
chr3 (41-99)||(32651436-32651494)
chr3 (52-114)||(42799757-42799818)
chr3 (30-119)||(14186648-14186736)
chr3 (35-112)||(19716204-19716281)
chr3 (52-101)||(44069776-44069825)
chr3 (59-119)||(13164775-13164835)
chr3 (35-102)||(4844503-4844570)
chr3 (35-102)||(4870199-4870266)
chr3 (60-111)||(13347918-13347969)
chr3 (41-112)||(14339617-14339688)
chr3 (36-94)||(16900674-16900732)
chr3 (65-119)||(53863889-53863943)
chr3 (41-122)||(30311303-30311384)
chr3 (43-120)||(34844370-34844446)
chr3 (65-102)||(42430351-42430388)
chr3 (30-107)||(51903865-51903942)
chr3 (60-120)||(26871521-26871581)
chr3 (41-89)||(28703402-28703450)
chr3 (41-89)||(39253727-39253775)
chr3 (55-119)||(40286869-40286933)
[»] chr2 (8 HSPs)
chr2 (41-120)||(7799033-7799112)
chr2 (53-114)||(30359659-30359720)
chr2 (35-120)||(37480074-37480159)
chr2 (67-119)||(32106566-32106618)
chr2 (65-119)||(18825341-18825395)
chr2 (41-121)||(26176324-26176400)
chr2 (41-119)||(42327393-42327471)
chr2 (41-121)||(29503269-29503349)
[»] scaffold0236 (1 HSPs)
scaffold0236 (44-114)||(24841-24911)
[»] scaffold0002 (1 HSPs)
scaffold0002 (59-119)||(142153-142213)
[»] scaffold0007 (1 HSPs)
scaffold0007 (52-119)||(222325-222392)
[»] scaffold0299 (1 HSPs)
scaffold0299 (41-103)||(11544-11606)
[»] chr5 (6 HSPs)
chr5 (53-103)||(16457826-16457876)
chr5 (41-102)||(14495803-14495864)
chr5 (41-114)||(16172982-16173054)
chr5 (57-98)||(18989015-18989056)
chr5 (53-94)||(33025498-33025538)
chr5 (41-89)||(31074262-31074310)
[»] scaffold0194 (1 HSPs)
scaffold0194 (41-101)||(13044-13104)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 17169905 - 17169708
Alignment:
Q  30 ttgataccggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtttaattatatt 129  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17169905 ttgattccggtgagaatcgagtctgagatcttgatgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtttaattatatt 17169806  T
Q  130 actgtatgagttcagatgctgaaggagtattaaggaggaggatcagagttggatatttgcttctaattaatcattaacatttacttgtaaaatggttt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17169805 actgtatgagttcagatgctgaaggagtattaaggaggaggatcagagttggatatttgcttctaattaatcattaacatttacttgtaaaatggttt 17169708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 20863453 - 20863393
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccacca 101  Q
    ||||||| | ||||||| ||||| ||||||||||||||||  ||||||| |||||||||||    
T  20863453 gagaatcaaatctgagaccttgaggaggagcacactccaaagtcccaagccaacaccacca 20863393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 6691543 - 6691621
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagt 114  Q
    ||||| |||||||||  |||||| ||||| ||||||||||||||||| ||  ||| ||||||||||||| ||| ||||||    
T  6691543 accggagagaatcgaacctgagaccttga-gaggagcacactccaaggtctaaagtcaacaccaccaggccaacccaagt 6691621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 32613150 - 32613221
Alignment:
Q  53 tgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtttaatt 124  Q
    |||||||||||  ||||||||||||| ||| |||||| ||| ||||||||| ||| |||||| || ||||||    
T  32613150 tgagatcttgagaaggagcacactcccagaccccaagtcaataccaccaggccaacccaagtgggcttaatt 32613221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 17170042 - 17170014
Alignment:
Q  7 agtataagggaggtaagtgcgttttgata 35  Q
    |||||||||||||||||||||||||||||    
T  17170042 agtataagggaggtaagtgcgttttgata 17170014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 34444881 - 34444809
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaag 113  Q
    |||||||||  |||||| ||||  ||||||||||||| ||| ||||||| ||| ||||||||| ||| |||||    
T  34444881 gagaatcgaacctgagaccttggggaggagcacactctaaggtcccaagtcaataccaccaggccaacccaag 34444809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 5579243 - 5579310
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||    
T  5579243 ctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggtcaacccaagtgggtt 5579310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 31835259 - 31835192
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||| ||||| |||||||||||||||||  |||||| ||||||||||||| ||| |||||| ||||    
T  31835259 ctgagaccttgaggaggagcacactccaagcacccaagccaacaccaccaggccaacccaagtgggtt 31835192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 38374591 - 38374676
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    ||||| |||||||||  || ||| ||||| ||||||||||||| ||| ||||||| ||||||||||| | ||| |||||| |||||    
T  38374591 accggggagaatcgaacctaagaccttgaggaggagcacactctaaggtcccaagccaacaccaccacgccaacccaagtgggttt 38374676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 5273606 - 5273666
Alignment:
Q  59 cttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||| ||||||||||||| ||| ||||||| ||||||||||||| ||| |||||| ||||    
T  5273606 cttgaggaggagcacactctaaggtcccaagccaacaccaccaggccaacccaagtgggtt 5273666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 7801247 - 7801180
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||| ||||| |||||||||||||| || ||||||| ||| ||||||||| ||| |||||| ||||    
T  7801247 ctgagaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 18847433 - 18847482
Alignment:
Q  53 tgagatcttgacgaggagcacactccaagatcccaagacaacaccaccagg 103  Q
    ||||||||||| ||||||||||||| |||||| |||| |||||||||||||    
T  18847433 tgagatcttga-gaggagcacactcgaagatctcaagccaacaccaccagg 18847482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 20952150 - 20952220
Alignment:
Q  44 aatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagt 114  Q
    |||||| |||||||| |||| |||||||||||||| || ||||||  ||| |||| |||||||| ||||||    
T  20952150 aatcgaatctgagattttgaggaggagcacactcccaggtcccaaaccaataccatcaggtcaacccaagt 20952220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 22760941 - 22760863
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||||||  |||||| ||||| |||||||||||||| || ||||||| ||| ||||||||  ||| |||||| ||||    
T  22760941 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 26459408 - 26459486
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||||||  |||||| ||||| |||||||||||||| || ||||||| ||| ||||| ||| ||| |||||| ||||    
T  26459408 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 48125196 - 48125250
Alignment:
Q  65 gaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||||||||||||||| ||||||| ||||||||||||  ||| |||||| ||||    
T  48125196 gaggagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggtt 48125250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 3968651 - 3968700
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccacca 101  Q
    |||||| ||||| ||||||||||||| ||| ||||||| |||||||||||    
T  3968651 ctgagaccttgaggaggagcacactcgaaggtcccaagtcaacaccacca 3968700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 48039670 - 48039723
Alignment:
Q  66 aggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||||| ||||||||||| |||| ||||||||||||| ||| |||||| ||||    
T  48039670 aggagcatactccaagatcgcaagccaacaccaccaggccaacccaagtgggtt 48039723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 9608627 - 9608675
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaag 89  Q
    |||||||||  |||||||||||| |||||| ||||||| ||||||||||    
T  9608627 gagaatcgaacctgagatcttgaggaggaggacactcccagatcccaag 9608675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 9836199 - 9836247
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaag 89  Q
    |||||||||  |||||||||||| |||||| ||||||| ||||||||||    
T  9836199 gagaatcgaacctgagatcttgaggaggaggacactcccagatcccaag 9836247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 26688932 - 26688865
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||| ||||| ||||||||||||||||| ||||||| ||||||||||||| ||| |||||| ||||    
T  26688932 ctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 26688865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 23361658 - 23361725
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||| ||||| |||||||||||||| | |||||||| ||| ||||||||||||| |||||| ||||    
T  23361658 ctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaacccaagtgggtt 23361725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 6530890 - 6530807
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||| |||||||||  ||||||  |||| |||||||||||||| || ||||||| ||||||||||||| ||| |||||| ||||    
T  6530890 accggggagaatcgaacctgagacattga-gaggagcacactcctaggtcccaagccaacaccaccaggccaacccaagtgggtt 6530807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 22268958 - 22269010
Alignment:
Q  68 gagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    |||||||||||||| ||||||| ||||||||||||| ||| |||||| |||||    
T  22268958 gagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttt 22269010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 3624663 - 3624585
Alignment:
Q  36 ccggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagt 114  Q
    |||| |||||||||  |||||| ||||| |||||||||||||| || ||||||| ||| ||||| ||| ||| ||||||    
T  3624663 ccggagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaacccaagt 3624585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 5801099 - 5801045
Alignment:
Q  67 ggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttta 121  Q
    |||||||||||| ||||||||||  || ||||||||||||| |||||| ||||||    
T  5801099 ggagcacactcctagatcccaagctaataccaccaggtcaacccaagtgggttta 5801045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 7140787 - 7140725
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccagg 103  Q
    ||||||||| ||||||| || || ||||||||||| || |||||||||| ||| |||||||||    
T  7140787 gagaatcgaatctgagagctcgaggaggagcacacacccagatcccaagccaataccaccagg 7140725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 16852418 - 16852337
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtttaa 122  Q
    |||||||||  |||||| || || |||||||||||||| || ||||||| ||| ||||| ||| ||| |||||| |||||||    
T  16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtttaa 16852337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 28636331 - 28636412
Alignment:
Q  31 tgataccggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaa 112  Q
    |||||||||  ||||| || ||||||||||||| || ||| ||||||| |||||||||| ||| || | |||||||| ||||    
T  28636331 tgataccggaaagaattgaatctgagatcttgaggaagagtacactcccagatcccaagtcaatactatcaggtcaacccaa 28636412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 28644065 - 28644146
Alignment:
Q  31 tgataccggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaa 112  Q
    |||||||||  ||||| || ||||||||||||| || ||| ||||||| |||||||||| ||| || | |||||||| ||||    
T  28644065 tgataccggaaagaattgaatctgagatcttgaggaagagtacactcccagatcccaagtcaatactatcaggtcaacccaa 28644146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 28653017 - 28653098
Alignment:
Q  31 tgataccggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaa 112  Q
    |||||||||  ||||| || ||||||||||||| || ||| ||||||| |||||||||| ||| || | |||||||| ||||    
T  28653017 tgataccggaaagaattgaatctgagatcttgaggaagagtacactcccagatcccaagtcaatactatcaggtcaacccaa 28653098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 34639337 - 34639385
Alignment:
Q  45 atcgagtctgagatcttgacgaggagcacactccaagatcccaagacaac 94  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||| ||||    
T  34639337 atcgagcctgagaccttga-gaggagcacactccaagatcccaagccaac 34639385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 6436555 - 6436631
Alignment:
Q  43 gaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||||| ||||||| ||||  |||||||||||||| |  ||||||| ||| ||||||||| ||| |||||| ||||    
T  6436555 gaatcgaatctgagaccttgcggaggagcacactcctaagtcccaagccaataccaccagggcaacccaagtgggtt 6436631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 18897232 - 18897164
Alignment:
Q  53 tgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttta 121  Q
    ||||| ||||| ||||||||||||| ||| ||||||  ||||||||| ||| ||| |||||| ||||||    
T  18897232 tgagaccttgaggaggagcacactctaaggtcccaaaccaacaccactaggccaacccaagtgggttta 18897164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 19703485 - 19703565
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttta 121  Q
    |||||||||  |||||| ||||| |||||||||||||  || ||||||| ||| ||||| ||| ||| |||||| ||||||    
T  19703485 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggttta 19703565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 35287776 - 35287732
Alignment:
Q  59 cttgacgaggagcacactccaagatcccaagacaacaccaccagg 103  Q
    ||||| |||||||||||||||| ||| |||| |||||||||||||    
T  35287776 cttgaggaggagcacactccaaaatctcaagccaacaccaccagg 35287732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 17623628 - 17623580
Alignment:
Q  53 tgagatcttgacgaggagcacactccaagatcccaagacaacaccacca 101  Q
    ||||| |||| |||||||||||||||||||||||||| |||||||||||    
T  17623628 tgagaccttgtcgaggagcacactccaagatcccaaggcaacaccacca 17623580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 19528319 - 19528403
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||| |||||||||  |||||| ||||| |||||||||||||  |||||||||| ||| ||||||||| ||| |||||| ||||    
T  19528319 accggggagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 15581163 - 15581217
Alignment:
Q  65 gaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||| |||||| ||||    
T  15581163 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 15581217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 33700771 - 33700855
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtttaatta 125  Q
    |||||||||  |||||| ||||| |||||||||||||| |||| ||||| ||| ||||| ||| ||| |||||| || |||||||    
T  33700771 gagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaagtgggcttaatta 33700855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 37047051 - 37046984
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    |||||| ||||| ||||||||||||||||| ||||||| ||||||||||||  ||| |||||| |||||    
T  37047051 ctgagaccttga-gaggagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggttt 37046984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 19480602 - 19480548
Alignment:
Q  43 gaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacacca 98  Q
    ||||||| | ||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  19480602 gaatcgaatgtgagaccttga-gaggagcacactccaagatcccaagtcaacacca 19480548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 4825038 - 4824992
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacacca 98  Q
    |||||| ||||| ||||||||||||||||| ||||||| ||||||||    
T  4825038 ctgagaccttgaagaggagcacactccaaggtcccaagccaacacca 4824992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 39714800 - 39714858
Alignment:
Q  65 gaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtttaat 123  Q
    ||||||||||||||||||||||||| |||| |||| | | ||| |||||| ||||||||    
T  39714800 gaggagcacactccaagatcccaagccaacgccactatgccaacccaagtgggtttaat 39714858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 20999290 - 20999361
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagt 114  Q
    |||||| ||| |||||||||||| ||  ||||||||||||||||| ||| | ||||||||||||||| ||||||    
T  20999290 gagaattgagcctgagatcttga-gaaaagcacactccaagatcc-aagcctacaccaccaggtcaacccaagt 20999361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 41508899 - 41508830
Alignment:
Q  51 tctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    ||||||| ||||| |||||||||||||| |||||||||  ||  ||||||||| ||| |||||| |||||    
T  41508899 tctgagaccttgaggaggagcacactcccagatcccaaaccagtaccaccaggccaacccaagtgggttt 41508830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 51814578 - 51814493
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    ||||| |||||||||  |||||| ||||| |||||||||||||  ||||| |||| ||| |||| |||| ||| |||||| |||||    
T  51814578 accggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggttt 51814493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 15786318 - 15786366
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaag 89  Q
    |||||||||  |||||| ||||| |||||||||||||| ||||||||||    
T  15786318 gagaatcgaacctgagaccttgaggaggagcacactcccagatcccaag 15786366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 31605840 - 31605908
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccagg 103  Q
    ||||| |||||||||   ||||| ||||| |||||||||||| |||| ||||||| |||||||| ||||    
T  31605840 accggggagaatcgaacttgagaccttgaggaggagcacacttcaaggtcccaagccaacaccatcagg 31605908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 29195149 - 29195094
Alignment:
Q  65 gaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||| |||||| |||||    
T  29195149 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttt 29195094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 38206135 - 38206201
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||| ||||| ||||||||||||||||| ||||||| || |||||||||||||| |||||| ||||    
T  38206135 ctgagaccttga-gaggagcacactccaaggtcccaagccagcaccaccaggtcaacccaagtgggtt 38206201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 51250532 - 51250599
Alignment:
Q  53 tgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    ||||||||||| | |||||||||||| |||||||||| ||| ||||||||| ||| |||||| |||||    
T  51250532 tgagatcttgaggcggagcacactcccagatcccaagccaataccaccaggccaacccaagtgggttt 51250599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 37980146 - 37980218
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagt 114  Q
    |||||||||  |||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||| ||| ||||||    
T  37980146 gagaatcgaacctgagaccttga-gaggagcacactccaaggtcccaagccaacatcaccaggccaacccaagt 37980218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 46295181 - 46295114
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccag 102  Q
    ||||| |||||||||  |||||| ||||| ||||||||||||||||  ||||||| |||||| |||||    
T  46295181 accggggagaatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaacactaccag 46295114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 56410028 - 56409946
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtttaatt 124  Q
    |||||||||  |||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||| ||  |||||| |||| ||||    
T  56410028 gagaatcgaacctgagaccttga-gaggagcacactccaaggtcccaagccaacagcaccaggccagcccaagtgggttgaatt 56409946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 37109349 - 37109427
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||||||  |||||| ||||| |||||||||||||| || ||||||| ||| ||||| ||| ||| |||||| ||||    
T  37109349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 39030135 - 39030173
Alignment:
Q  65 gaggagcacactccaagatcccaagacaacaccaccagg 103  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  39030135 gaggagcacactccaaggtcccaagccaacaccaccagg 39030173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 21344871 - 21344814
Alignment:
Q  65 gaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtttaa 122  Q
    ||||||||||||||||| ||||||| ||||| || |||| ||| |||||| |||||||    
T  21344871 gaggagcacactccaaggtcccaagccaacatcatcaggccaacccaagtgggtttaa 21344814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 31759657 - 31759734
Alignment:
Q  42 agaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||||| ||||||| ||||| |||||||||||||| |  ||||||| ||| ||||| || |||| |||||| ||||    
T  31759657 agaatcgaatctgagaccttgaggaggagcacactcccaagtcccaagccaataccactagatcaacccaagtgggtt 31759734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 32992701 - 32992636
Alignment:
Q  30 ttgataccggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaaca 95  Q
    |||| ||||| |||||||||   ||||| ||||| ||||||||||||||||| ||||||| |||||    
T  32992701 ttgacaccggggagaatcgaacttgagaccttgaggaggagcacactccaaggtcccaagccaaca 32992636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 38869844 - 38869788
Alignment:
Q  43 gaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccac 99  Q
    |||||||  |||||| ||||| |||||||||||||| |||||||||| ||| |||||    
T  38869844 gaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaataccac 38869788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 3055061 - 3054994
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||||||||| ||| ||||| ||||||| ||||||| ||||||||||||| ||| |||||| ||||    
T  3055061 ctgagatcttgaggagaagcacgctccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 3054994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 32651436 - 32651494
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccac 99  Q
    ||||||||| ||||||||||||| |||||||||||||| || ||||||| ||| |||||    
T  32651436 gagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaataccac 32651494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 42799757 - 42799818
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagt 114  Q
    |||||| ||||| ||||||||||||||||| ||||||| ||||||||||||| ||| ||||||    
T  42799757 ctgagaccttga-gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagt 42799818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 14186736 - 14186648
Alignment:
Q  30 ttgataccggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||| ||||| |||||||||  |||||| ||||| |||||||||||||| || ||||||||||| ||||| ||| ||| |||||| ||||    
T  14186736 ttgacaccggagagaatcgaacctgagaccttgaggaggagcacactcc-aggtcccaagacaataccactaggccaacccaagtgggtt 14186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 19716281 - 19716204
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaa 112  Q
    ||||| |||||||||  | |||| ||||| ||||||||||||||| | ||||||| ||||||||||| ||||| ||||    
T  19716281 accggggagaatcgaaccagagaccttgaggaggagcacactccatggtcccaagccaacaccaccatgtcaacccaa 19716204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 44069825 - 44069776
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccacca 101  Q
    |||||| ||||| |||||||||||||||||||| |||| |||||||||||    
T  44069825 ctgagaccttgaggaggagcacactccaagatctcaagccaacaccacca 44069776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 13164775 - 13164835
Alignment:
Q  59 cttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||| ||| ||||||||||||| ||| ||| ||||||||||||||||||| |||| ||||    
T  13164775 cttgaggagtagcacactccaaggtccaaagccaacaccaccaggtcaatcaaagtgggtt 13164835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 4844503 - 4844570
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccag 102  Q
    ||||| |||||||||  |||||| || || |||||||||||||| |||||||||| ||| ||||||||    
T  4844503 accggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccag 4844570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 4870199 - 4870266
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccag 102  Q
    ||||| |||||||||  |||||| || || |||||||||||||| |||||||||| ||| ||||||||    
T  4870199 accggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccag 4870266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 13347918 - 13347969
Alignment:
Q  60 ttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatcca 111  Q
    |||| ||| ||||||||||||| ||| ||| |||||||||||||||||||||    
T  13347918 ttgaggagtagcacactccaaggtccaaagccaacaccaccaggtcaatcca 13347969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 14339688 - 14339617
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaa 112  Q
    |||||||||  ||||||  |||| |||||||||||||| | |||||||| ||| ||||||||| ||||||||    
T  14339688 gagaatcgaacctgagacattgaggaggagcacactcccaaatcccaagccaataccaccaggccaatccaa 14339617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 16900674 - 16900732
Alignment:
Q  36 ccggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaac 94  Q
    |||| |||||||||   ||||| ||||||||||||||||||||||| ||||||| ||||    
T  16900674 ccggggagaatcgaacatgagaccttgacgaggagcacactccaaggtcccaagccaac 16900732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 53863889 - 53863943
Alignment:
Q  65 gaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||||||||||||||| ||||||| ||||| ||||||| ||| |||||| ||||    
T  53863889 gaggagcacactccaaggtcccaagccaacatcaccaggacaacccaagtgggtt 53863943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 30311384 - 30311303
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtttaa 122  Q
    |||||||||  |||||| ||||| |||||||||||||| |||||||||| | | ||||| ||| ||| ||| || |||||||    
T  30311384 gagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagcctataccactaggccaacccaggtgggtttaa 30311303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 34844446 - 34844370
Alignment:
Q  43 gaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    |||||||  |||||| ||||| ||||||||||||||||| || |||| ||||| ||||||| ||| |||||| |||||    
T  34844446 gaatcgaacctgagaccttga-gaggagcacactccaaggtctcaagccaacaacaccagggcaacccaagtgggttt 34844370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 42430388 - 42430351
Alignment:
Q  65 gaggagcacactccaagatcccaagacaacaccaccag 102  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  42430388 gaggagcacactccaagatcccaagtcaataccaccag 42430351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 51903865 - 51903942
Alignment:
Q  30 ttgataccggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaa 107  Q
    |||| ||||| |||||||||  |||||| |  || |||||||||||||| |||||||||| ||| |||| ||||||||    
T  51903865 ttgacaccggagagaatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaataccaacaggtcaa 51903942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 26871521 - 26871581
Alignment:
Q  60 ttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    |||| |||||| | |||||||| ||||||| ||||||||||||| ||| |||||| |||||    
T  26871521 ttgaggaggagaaaactccaaggtcccaagccaacaccaccaggccaacccaagtgggttt 26871581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 28703402 - 28703450
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaag 89  Q
    |||||||||  |||||| ||||| |||||||||||||| ||||||||||    
T  28703402 gagaatcgaacctgagaccttgaagaggagcacactcccagatcccaag 28703450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 39253775 - 39253727
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaag 89  Q
    |||||||||  |||||| ||||| |||||||||||||| ||||||||||    
T  39253775 gagaatcgaacctgagaccttgaagaggagcacactcccagatcccaag 39253727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 40286869 - 40286933
Alignment:
Q  55 agatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||||||| ||||| |||||||||||||| ||||  |||||||||||  ||| |||||| ||||    
T  40286869 agatcttgaggaggaccacactccaagatctcaagcgaacaccaccagaccaacccaagtgggtt 40286933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 7799033 - 7799112
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    ||||||||| |||||||||| || |||||||||||||| |  ||||||| ||| ||||||||| ||| |||||| |||||    
T  7799033 gagaatcgaatctgagatctcgaggaggagcacactcccaagtcccaagccaataccaccaggacaacccaagtgggttt 7799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 30359720 - 30359659
Alignment:
Q  53 tgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagt 114  Q
    ||||| ||||| ||||||||||||||||| ||||||| ||||||||||| | ||| ||||||    
T  30359720 tgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaagccaacccaagt 30359659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 37480159 - 37480074
Alignment:
Q  35 accggtgagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttt 120  Q
    ||||| |||||||||  |||||| ||||| |||||||||||||  || ||||||| ||| ||||||||| ||| |||||| |||||    
T  37480159 accggggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggttt 37480074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 32106618 - 32106566
Alignment:
Q  67 ggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||||||||||||| ||||||| ||||||||||||| ||| |||||| ||||    
T  32106618 ggagcacactccaaggtcccaagtcaacaccaccaggccaacccaagtgggtt 32106566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 18825395 - 18825341
Alignment:
Q  65 gaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||||||||||| || ||||||| |||||||||||||| || |||||| ||||    
T  18825395 gaggagcacactcctaggtcccaagccaacaccaccaggtaaacccaagtgggtt 18825341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 26176324 - 26176400
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttta 121  Q
    ||||||||| ||||||| ||||| ||||||||||| ||||| ||||||| |||   ||||||| ||| |||||||||||||    
T  26176324 gagaatcgaatctgagaccttga-gaggagcacaccccaaggtcccaagtcaa---caccaggccaacccaagtaggttta 26176400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 42327393 - 42327471
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||||||||  |||||| ||||| |||||||||||||| || ||||||| ||| ||||| ||| ||| |||||| ||||    
T  42327393 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 29503349 - 29503269
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggttta 121  Q
    |||||||||  |||||| ||||| |||||||||||||| || ||||||  ||| ||||| ||| ||| |||||| ||||||    
T  29503349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggttta 29503269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 24841 - 24911
Alignment:
Q  44 aatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagt 114  Q
    |||||| ||||||| ||||| |||||||| ||||||||  |||||| ||||||||||||| ||| ||||||    
T  24841 aatcgaatctgagaccttgaggaggagcaaactccaaggccccaagtcaacaccaccaggccaacccaagt 24911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 142213 - 142153
Alignment:
Q  59 cttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    ||||| ||| ||||||||||||| ||| ||| ||||||||||||||||||| |||| ||||    
T  142213 cttgaggagtagcacactccaaggtccaaagccaacaccaccaggtcaatcaaagtgggtt 142153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 222392 - 222325
Alignment:
Q  52 ctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagtaggtt 119  Q
    |||| ||||||| ||||| ||||||||||||||||||| ||||| |||| |  ||| |||||||||||    
T  222392 ctgaaatcttgaagaggaacacactccaagatcccaagccaacatcaccggaacaacccaagtaggtt 222325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 11606 - 11544
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccagg 103  Q
    |||||||||  |||||| || || |||||||||||||| |||||||||| ||| |||||||||    
T  11606 gagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaataccaccagg 11544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 16457876 - 16457826
Alignment:
Q  53 tgagatcttgacgaggagcacactccaagatcccaagacaacaccaccagg 103  Q
    ||||| ||||| ||||||||||||||||| ||||||| ||| |||||||||    
T  16457876 tgagaccttgaggaggagcacactccaaggtcccaagccaataccaccagg 16457826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 14495803 - 14495864
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccag 102  Q
    ||||||| | ||||||| || || |||||||||||||| |||||||||| ||| ||||||||    
T  14495803 gagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccag 14495864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 16172982 - 16173054
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccaccaggtcaatccaagt 114  Q
    |||||||||  |||||| ||||| ||||||||||||||||| || |||| |||||| |||||| ||| ||||||    
T  16172982 gagaatcgaacctgagaccttga-gaggagcacactccaaggtctcaagccaacactaccaggccaacccaagt 16173054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 18989015 - 18989056
Alignment:
Q  57 atcttgacgaggagcacactccaagatcccaagacaacacca 98  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  18989015 atcttgaagaggagcacactccaaggtcccaagccaacacca 18989056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 33025538 - 33025498
Alignment:
Q  53 tgagatcttgacgaggagcacactccaagatcccaagacaac 94  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  33025538 tgagatcttga-gaggagcacactccaagatcccaagccaac 33025498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 31074310 - 31074262
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaag 89  Q
    |||||||||  |||||||||||| ||||| |||||||||| ||||||||    
T  31074310 gagaatcgaacctgagatcttgaggaggaacacactccaaaatcccaag 31074262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 13044 - 13104
Alignment:
Q  41 gagaatcgagtctgagatcttgacgaggagcacactccaagatcccaagacaacaccacca 101  Q
    |||||||||  |||||| ||||| |||||||||||||| ||||| |||| ||| |||||||    
T  13044 gagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaataccacca 13104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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