View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13966_low_1 (Length: 432)
Name: NF13966_low_1
Description: NF13966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13966_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 44892779 - 44892364
Alignment:
| Q |
1 |
aaaatgttgactttgttatgtcaaatgagcacgaagaataggaactcgccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44892779 |
aaaatgttgactttgttatgtcaaatgagcacgaagaataggaactcaccaatgcgtttttgtggatgattatttgcaatcctattgtagacactgcgcc |
44892680 |
T |
|
| Q |
101 |
aattgggtcgtgcaaagtaagacgcgatgggtgttccatttaagatatccaaaccttttttagcatggtttagtgattgaaggacagtaacaagagcaga |
200 |
Q |
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| T |
44892679 |
aattgggtcgtgcaaagtaagacgcgatgggtgttccatttaagatatccaaaccttctttagcatggtttagtgattgaaggacagtaacaagagcaga |
44892580 |
T |
|
| Q |
201 |
gcgagcatcaccgtcttcatatacactagtcaagtgactgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccctttaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44892579 |
gcgagcatcaccgtcttcatatacactagtcaagtgactgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccctttaaac |
44892480 |
T |
|
| Q |
301 |
caatcaaagaaaccttgttcaccagccatccagtaaaaataagcctttctagttttaaagttactcaaatcagttttcttgtgttgtgatggtcttgatg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44892479 |
caatcaaagaaaccttgttcaccagccatccagtaaaaataagcctttctagttttaaagttactcaaatcagttttcttgtgttctgatggtcttgatg |
44892380 |
T |
|
| Q |
401 |
atttaccaattgttcc |
416 |
Q |
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| T |
44892379 |
atttaccaattgttcc |
44892364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 38 - 404
Target Start/End: Complemental strand, 44901395 - 44901029
Alignment:
| Q |
38 |
ataggaactcgccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttcc |
137 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||| | |||||||| |||| ||| || |||| ||||||| |||| || ||||||||| |
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| T |
44901395 |
ataggaactcaccaatgcgtttttgtggatgattaagtgcaatgcgcttgtagacgctgcaccattttggtctagcaaagtgagacttgacgggtgttcc |
44901296 |
T |
|
| Q |
138 |
atttaagatatccaaaccttttttagcatggtttagtgattgaaggacagtaacaagagcagagcgagcatcaccgtcttcatatacactagtcaagtga |
237 |
Q |
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| | |||||||||| ||| |||||||||||||||||||||||||| | || || ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44901295 |
agtcaagatatccacaccatttttagcatggtttagtgattgaagcatagcaataagagcagattgagcatcaccgtcttcatatacactagtcaagtga |
44901196 |
T |
|
| Q |
238 |
ctgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccctttaaaccaatcaaagaaaccttgttcaccagccatccagtaaa |
337 |
Q |
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||||| |||||||||||| || | | || ||||| |||||||||| ||||| ||||||||||||||||||||||||||| | |||| ||| |||| |
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| T |
44901195 |
ctgtggatctcaattactctcctacggtcttcttccaccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaa |
44901096 |
T |
|
| Q |
338 |
aataagcctttctagttttaaagttactcaaatcagttttcttgtgttgtgatggtcttgatgattt |
404 |
Q |
| |
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||||||||||||||||||| |||||| | ||| | ||||||||| ||||||||| ||||| |||||| |
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|
| T |
44901095 |
aataagcctttctagttttgaagttatttaaaccggttttcttgcgttgtgatgatcttggtgattt |
44901029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 33 - 416
Target Start/End: Complemental strand, 44918150 - 44917767
Alignment:
| Q |
33 |
gaagaataggaactcgccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggt |
132 |
Q |
| |
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||||||| |||||| |||| |||| ||||||||||||| |||||| | ||||||||||| |||||||| ||| ||||||| |||| || | || |
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| T |
44918150 |
gaagaatgagaactcaccaacgcgtgtttgtggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaagtgagacttgacgcgt |
44918051 |
T |
|
| Q |
133 |
gttccatttaagatatccaaaccttttttagcatggtttagtgattgaaggacagtaacaagagcagagcgagcatcaccgtcttcatatacactagtca |
232 |
Q |
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|||||| | |||||||| ||| ||||||||||| || |||||||| || | || || ||||||||||||||||||||| |||||||| |||||||| |
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| T |
44918050 |
gttccagagacgatatccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctcttcataaacactagtac |
44917951 |
T |
|
| Q |
233 |
agtgactgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccctttaaaccaatcaaagaaaccttgttcaccagccatcca |
332 |
Q |
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| | | |||||| |||||||||| | | ||||| ||||||||||||||||| ||||| ||||||||||||||||| |||| ||||| | || | ||| |
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| T |
44917950 |
aataattgtgtagctcaattactcccctatgatcatcttcagccacctcattcattactcctttaaaccaatcaaatgaaccctgttctctagtaaccca |
44917851 |
T |
|
| Q |
333 |
gtaaaaataagcctttctagttttaaagttactcaaatcagttttcttgtgttgtgatggtcttgatgatttaccaattgttcc |
416 |
Q |
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||||||||||||| | ||||||||||| || ||||| | ||| ||||||||||||||||||| | |||||||| | ||||||| |
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| T |
44917850 |
gtaaaaataagccctcttagttttaaagctattcaaaccggttctcttgtgttgtgatggtctcggtgatttactacttgttcc |
44917767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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