View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13966_low_2 (Length: 401)
Name: NF13966_low_2
Description: NF13966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13966_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 49513676 - 49513303
Alignment:
| Q |
16 |
aatgttgacttacatacacaccttcacatagttccagtccatgtagacaacagccagcctatgagtatctttctcaatcactgatacctcttcgtgttcc |
115 |
Q |
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| T |
49513676 |
aatgttgacttacatacacaccttcacatagttccagtccatgtagacaacagccagcctatgagtatctttctcaatcactgatacctcttcgtgttcc |
49513577 |
T |
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| Q |
116 |
tattttataacaacaac---aacactaataatgattaaaaagaagtgatatatttgaaaataccagacgagacatttcgaattttgctcataacagtacc |
212 |
Q |
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| T |
49513576 |
tattttataacaacaacaacaacactaataatgattaaaaagaagtgatagatttgaaaataccagacgagacatttcgaattttgctcataacagtacc |
49513477 |
T |
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| Q |
213 |
tgcatatcaagtgtgtcagtatcttcatctgtagtagaatttgattcattctctactcctttaacatgctcctccatcaatccctcttgttcttcttcta |
312 |
Q |
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| T |
49513476 |
tgca-----------tcagtatcttcatctgtagtagaatttgattcattctctactcctttaacatgctcctccatcaatccctcttgttcttcttcta |
49513388 |
T |
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| Q |
313 |
ctttgtagtaatggcgaagaaaatcagatttaaaagtgaggttgttttctacgggcacctctcttgtcgaaaacgagggtctgtg |
397 |
Q |
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| T |
49513387 |
ctttgtagtaatggcgaagaaaatcagatttaaaagtgaggttgttttctacgggcacctctcttgtcgaaaaagagggtctgtg |
49513303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 27744857 - 27744743
Alignment:
| Q |
32 |
cacaccttcacatagttccagtccatgtagacaacagccagcctatgagtatctttctcaatcactgatacc---tcttcgtgttcctattttataacaa |
128 |
Q |
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| T |
27744857 |
cacaccttcacatagttccagtccatgttgacaacagcaagcctataagtatctttatcaatcaccgatacctcgtcttcctgatcctatttaataacaa |
27744758 |
T |
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| Q |
129 |
caacaacactaataa |
143 |
Q |
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||| ||||||||||| |
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| T |
27744757 |
caaaaacactaataa |
27744743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 363
Target Start/End: Complemental strand, 27744629 - 27744488
Alignment:
| Q |
234 |
tcttcatctgtagtagaatttgattcattctctactcctttaacatgctcctccatcaatccctcttgt------------tcttcttctactttgtagt |
321 |
Q |
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| T |
27744629 |
tcttcgtctgtagtagaatttgattcattctctgctgctttatcattatcatccatcaattcctcttttccttcttcttcttcttcttctactttgtagt |
27744530 |
T |
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| Q |
322 |
aatggcgaagaaaatcagatttaaaagtgaggttgttttcta |
363 |
Q |
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| T |
27744529 |
aatggcgaagaaaatcagattttaaagtgaggttgttttcta |
27744488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 27744686 - 27744643
Alignment:
| Q |
201 |
cataacagtacctgcatatcaagtgtgtcagtatcttcatctgt |
244 |
Q |
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| T |
27744686 |
cataaaagtacctgcatatcaagtgtgtcagtatcttcatctgt |
27744643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 38529589 - 38529668
Alignment:
| Q |
29 |
atacacaccttcacatagttccagtccatgtagacaacagccagcctatgagtatctttctcaatcactgatacctcttc |
108 |
Q |
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| T |
38529589 |
atacgcaccttcacataccgccagtccatattaacaacagccaacctatgtgtttctttctcaatctctgctacctcttc |
38529668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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