View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13966_low_5 (Length: 276)
Name: NF13966_low_5
Description: NF13966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13966_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 33 - 276
Target Start/End: Original strand, 32973913 - 32974168
Alignment:
| Q |
33 |
acatcatcaacaaccacctttctaccctaacccatcatacccaccaccacca------------catcaacccgaaactcaagtcttccacactgggcac |
120 |
Q |
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| T |
32973913 |
acatcatcaacaaccacctttctaccctaacccatcatacccaccaccaccacaacaacaaccacatcaacccgaaactcaagtcttccacaccgggcac |
32974012 |
T |
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| Q |
121 |
gtgtcccgtaatgacaatttcaacaattaccctcaaccaccacaacctcaccaagaaactcaagtgttccacactggacacgtgtcccatgaaaacttca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32974013 |
gtgtcccgtaatgacaatttcaacaattaccctcaacaaccacaacctcaccaagaaactcaagtgttccacactggacacgtgtcccatgaaaacttca |
32974112 |
T |
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| Q |
221 |
acagttaccctcaaccaccaccacctcaatctcatcatcaacaacccagctacggc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32974113 |
acagttaccctcaaccaccaccacctcaatctcatcatcaacaacccagctacggc |
32974168 |
T |
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