View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13966_low_6 (Length: 238)
Name: NF13966_low_6
Description: NF13966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13966_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 40182084 - 40181869
Alignment:
| Q |
12 |
agaagcataggttagagttcaacattctcaatcgctcagtaaacctaaacctagccgtgtgtgtgccgtttgtctccaaccgattctcactcgcaaacta |
111 |
Q |
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| T |
40182084 |
agaaacataggttagagttcaacattctcaatcgctcagtaaacctaaacctagccgtgtgtgtgccgtctgtctccaaccgattctcactcgcaaacta |
40181985 |
T |
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| Q |
112 |
tatataagaagatgtgggtgtcgtttgcagcaagatatggcaggaactacatcacttcttctt------cttcctcctcatcatcatccacacgaagaat |
205 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
40181984 |
tatatatgcagatgtgggtgtcgtttgcagcaagatatggcaggaactacatcacttcttcttcttcttcttcctccttatcatcatccacacgaagaat |
40181885 |
T |
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| Q |
206 |
tcctaaccctaacaag |
221 |
Q |
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|||||||||||||||| |
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| T |
40181884 |
tcctaaccctaacaag |
40181869 |
T |
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